hi, Some updates: I tried to split and open the huge interact.pep.xml.index (>5G) using a text editor. It turns out be blank, without any text. And I found this file is not essential for running ProteinProphet.
I can proceed to ProteinProphet with the interact.pep.xml file. Analyzing data stored in d drive does not effect. Just don't understand what's the huge interact.pep.xml.index for. Thanks for attention! Best regards, Tiannan On Mon, Jan 24, 2011 at 9:29 PM, tiannan <[email protected]> wrote: > hi, > > I'm trying to use TPP v4.4 to analyze my multiple Mascot dat > search result files. It works in analyzing few dat files in my hands, > but when I tried to analyze ~30 files, the PepXMLViewer.cig is > generating a huge file named as interact.pep.xml.index (>3G now, and > still growing..). My question is: is it normal to have such a huge > file, or is it a bug? It may be worth noting that my dat files are not > stored in c:/Inetpub/wwwroot/ISB/data/, but in a D drive. > > My protocols are as below (executed in DOS): > > 1, convert dat to pepXML using Mascot2XML. > > 2, convert multiple (~30) pepXML to interact.pep.xml using xinteract. > It shows: > > >running: "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml" > MINPROB=0.05" > ... > >running: "C:/Inetpub/tpp-bin/ProphetModels.pl -i interact.pep.xml" > ... > >running: "C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml"" > ... > >running: "C:/Inetpub/tpp-bin/RefreshParser "interact.pep.xml" > "c:/Inetpub/wwwroot/ISB/db/myDatabase.fasta"" > ... > >>running: "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I > d:/myMSdata/interact.pep.xml" > > 3, I noticed there was a file named as interact.pep.xml had been > generated rapidly, but the last command in step 2 is still generating > huge interact.pep.xml.index which slowly grows to >3G, and it is still > growing. > > A warning showed several time is as below: > > problem (ph8): d:/myMSdata/interact.pep.xml is not mounted under > webserver root: c:/Inetpub/wwwroot/ > > > Thanks a lot! > > Best regards, > Tiannan > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
