hi, I can also successfully analyze the files in d drive, if I skip the command "PepXMLViewer.cgi". Now the question is what's PepXMLViewer.cgi for when we execute the commands in DOS.Thanks!
cheers, Tiannan On Jan 25, 12:04 pm, Vishal Swaroop <[email protected]> wrote: > Hi, > > We have successfully implemented storing files under D: drive some time > back... > > Not sure, but do you "tmp" folder under c: root.... > > Is it possible to send your apache config file? > > Thanks > > On Mon, Jan 24, 2011 at 8:29 AM, tiannan <[email protected]> wrote: > > hi, > > > I'm trying to use TPP v4.4 to analyze my multiple Mascot dat > > search result files. It works in analyzing few dat files in my hands, > > but when I tried to analyze ~30 files, the PepXMLViewer.cig is > > generating a huge file named as interact.pep.xml.index (>3G now, and > > still growing..). My question is: is it normal to have such a huge > > file, or is it a bug? It may be worth noting that my dat files are not > > stored in c:/Inetpub/wwwroot/ISB/data/, but in a D drive. > > > My protocols are as below (executed in DOS): > > > 1, convert dat to pepXML using Mascot2XML. > > > 2, convert multiple (~30) pepXML to interact.pep.xml using xinteract. > > It shows: > > > >running: "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml" > > MINPROB=0.05" > > ... > > >running: "C:/Inetpub/tpp-bin/ProphetModels.pl -i interact.pep.xml" > > ... > > >running: "C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml"" > > ... > > >running: "C:/Inetpub/tpp-bin/RefreshParser "interact.pep.xml" > > "c:/Inetpub/wwwroot/ISB/db/myDatabase.fasta"" > > ... > > >>running: "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I > > d:/myMSdata/interact.pep.xml" > > > 3, I noticed there was a file named as interact.pep.xml had been > > generated rapidly, but the last command in step 2 is still generating > > huge interact.pep.xml.index which slowly grows to >3G, and it is still > > growing. > > > A warning showed several time is as below: > > > problem (ph8): d:/myMSdata/interact.pep.xml is not mounted under > > webserver root: c:/Inetpub/wwwroot/ > > > Thanks a lot! > > > Best regards, > > Tiannan > > > -- > > You received this message because you are subscribed to the Google Groups > > "spctools-discuss" group. > > To post to this group, send email to [email protected]. > > To unsubscribe from this group, send email to > > [email protected]<spctools-discuss%[email protected]> > > . > > For more options, visit this group at > >http://groups.google.com/group/spctools-discuss?hl=en. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
