I believe it is available using peakPicking true, but you can confirm by forwarding your question on the Proteowizard mailing list as they are the developers of msconvert.
https://lists.sourceforge.net/lists/listinfo/proteowizard-support On Thu, Feb 10, 2011 at 11:19 AM, John Prince <[email protected]> wrote: > Is centroiding (peak picking) without vendor software implemented? > > The interface for doing this is clearly suggested in the msconvert > help: > peakPicking prefer_vendor:<true|false> int_set(MS levels) > > I run this kind of command on a system without thermo libraries: > ./pwiz_bin/msconvert Hek_cells_100904050914.mzXML --mzXML -z -- > filter "peakPicking false [1]" -o centroided_by_pwiz > > It generates an output file that is identical to the profile file, but > with the added line: > <dataProcessing centroided="1"> > > So, it would appear that no vendor-less centroiding is yet > implemented. Can this be confirmed? > > Much thanks for all the hard work on an outstanding tool set in > general. > > --John > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- Joe Slagel Institute for Systems Biology [email protected] (206) 732-1362 -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
