Hi Rudy, For both questions you have, what version of TPP are you using? and I'm assuming you are trying to convert the .RAW to mzXML using the petunia interface? (And I'll defer to others on your first question...unless you don't get an answer).
-Joe On Sat, Feb 26, 2011 at 6:02 PM, Ruby <[email protected]> wrote: > Hi- > 1) I'm trying to use the TPP to process my Sequest search results. > (since I have access to sequest only on a cluster, I'm not able to use > the TPP to setup the search, which is what I'd like to do). Rather, > I'm trying to use the .out files for peptide & proteinprophet > processing. > > However, I get this error when I try to process my directory that has > the .out files from the Sequest search. > > command "c:\Inetpub\tpp-bin\Out2XML c:/Inetpub/wwwroot/ISB/data/ > RG_81_2 1 -Etrypsin" failed: Unknown error > > Is this due to the fact that I did a semi-enzyme search? How can I > work around this? I didn't see a semi-enzyme choice in the 'options' > section of the convert to pepXML page. > > 2) I'd like to do an XTandem search via the TPP. When I try to > convert .RAW to mzXML, I get this error: > 'c:\Inetpub\tpp-bin\ReAdW' is not recognized as an internal or > external command, operable program or batch file. > > I thought that TPP wasn't using ReAdW anymore, but rather the > MSConverter. I have downloaded the MSFileReader, but what parts of > that go in the tpp-bin directory?? Basically, how do I get it > configured so that it uses MSConvert for processing the .RAW files? > > Thanks! > Ruby > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- Joe Slagel Institute for Systems Biology [email protected] (206) 732-1362 -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
