I tried to convert Mascot DTA to pepXML using MASCOT2XML program
without any success. I get following error
c:/Inetpub/wwwroot/ISB/data/F002856.pep.xml [ Unreadable! ]
c:/Inetpub/wwwroot/ISB/data/F002857.pep.xml [ Unreadable! ]
un_in c:/Inetpub/wwwroot/ISB/data; c:\Inetpub\tpp-bin\Mascot2XML c:/
Inetpub/wwwroot/ISB/data/F002856.dat -Dc:/Inetpub/wwwroot/ISB/data/
dbase/uniprot_trembl.fasta -pI -Etrypsin -notgz -desc -shortid
command "c:\Inetpub\tpp-bin\Mascot2XML c:/Inetpub/wwwroot/ISB/data/
F002856.dat -Dc:/Inetpub/wwwroot/ISB/data/dbase/uniprot_trembl.fasta -
pI -Etrypsin -notgz -desc -shortid" failed: Unknown error
Command FAILED
THe Dta was generated by searching thermo raw files using MASCOT
2.3.
THanks
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