Windows or Unix?  A long time ago I played around with a Makefile that would
run the process, and had the added benefit of "knowing" when to rerun
certain parts when files changed (such as edits to parameters).

-Joe


On Wed, Aug 3, 2011 at 7:21 AM, John Bryant <[email protected]> wrote:

> Does anyone have a script that automatically runs the entire TPP
> process from converting .RAW files from the mass spectrometer to
> identify the proteins using protein prophet?
> I have used the TPP for a while and I don't like having to wait for
> each step to finish before I manually initiate the next step of the
> process.
>
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