Thank Patrick Pedrioli; he was the one who fixed the bug! On Fri, Oct 21, 2011 at 10:59 AM, Ping <[email protected]> wrote: > Thank you soooo much Jimmy. It works now!! > > On Oct 20, 2:18 pm, Jimmy Eng <[email protected]> wrote: >> There's been a fix checked in to the Sashimi subversion repository >> that addresses a known issue with XPressPeptideParser. Hopefully that >> fix addresses the issue you're seeing. If not, let me know. >> >> Since you're using linux, build XPressPeptideParser from either the >> trunk or branch4-5 code. >> >> On Thu, Oct 20, 2011 at 2:04 PM, Ping <[email protected]> wrote: >> > Hi, >> >> > I installed tpp 4.5 on a Ubuntu 10.04 system. While I run >> > XPressPeptideParser on either XTandem/OMSSA serach result pep.xml, I >> > got this error: >> >> > *** glibc detected *** /usr/local/src/trans_proteomic_pipeline/build/ >> > Ubuntu-x86_64/XPressPeptideParser: free(): invalid next size (fast): >> > 0x0000000001b25640 *** >> > ======= Backtrace: ========= >> > /lib/libc.so.6(+0x775b6)[0x7f8c406735b6] >> > /lib/libc.so.6(cfree+0x73)[0x7f8c40679e83] >> > /usr/local/src/trans_proteomic_pipeline/build/Ubuntu-x86_64/ >> > XPressPeptideParser[0x41af70] >> > /usr/local/src/trans_proteomic_pipeline/build/Ubuntu-x86_64/ >> > XPressPeptideParser[0x43f1bf] >> > ... >> > /lib/libc.so.6(__libc_start_main+0xfd)[0x7f8c4061ac4d] >> > /usr/local/src/trans_proteomic_pipeline/build/Ubuntu-x86_64/ >> > XPressPeptideParser[0x405ef9] >> >> > I run XPressPeptideParser on total 32 files, and 10 of them got the >> > error. The others are fine. I debug the code, and it seems it is >> > something with mzXML file. >> >> > Can anyone help? >> >> > Thanks, >> >> > Ping >> >> > -- >> > You received this message because you are subscribed to the Google Groups >> > "spctools-discuss" group. >> > To post to this group, send email to [email protected]. >> > To unsubscribe from this group, send email to >> > [email protected]. >> > For more options, visit this group >> > athttp://groups.google.com/group/spctools-discuss?hl=en. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > >
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