Before I reinstall my TPP, I was wondering whether the information on Network Domain, Server Name and Administrator's Email Address matters. Are there specific information I should put in those fields? Previously, I used my university's website and my email address there.
Chris On Oct 25, 2:52 pm, Chris L <linci%[email protected]> wrote: > Hi Vishal and all, > > The only log file I see in C:\tmp is a tpp_web.log file and it > contains 2 lines > Cannot run user command; previous still running > Cannot run user command; previous still running > > I am not sure which Apache log you are talking about. Below is a > snippet of some lines from my error.log inside Apache's log folder: > [Fri Oct 21 10:14:39 2011] [warn] pid file C:/Program Files/Apache > Software Foundation/Apache2.2/logs/httpd.pid overwritten -- Unclean > shutdown of previous Apache run? > [Fri Oct 21 10:14:39 2011] [notice] Apache/2.2.8 (Win32) configured -- > resuming normal operations > [Fri Oct 21 10:14:39 2011] [notice] Server built: Jan 18 2008 00:37:19 > [Fri Oct 21 10:14:39 2011] [notice] Parent: Created child process 1684 > [Fri Oct 21 10:14:39 2011] [notice] Child 1684: Child process is > running > [Fri Oct 21 10:14:39 2011] [notice] Child 1684: Acquired the start > mutex. > [Fri Oct 21 10:14:39 2011] [notice] Child 1684: Starting 250 worker > threads. > [Fri Oct 21 10:14:39 2011] [notice] Child 1684: Starting thread to > listen on port 8080. > [Fri Oct 21 10:17:13 2011] [error] [client 127.0.0.1] Premature end of > script headers: PepXMLViewer.cgi, > referer:http://localhost:8080/tpp-bin/tpp_gui.pl?Action=display&page=filebrow... > [Tue Oct 25 14:31:39 2011] [error] [client 127.0.0.1] Premature end of > script headers: test.cgi > [Tue Oct 25 14:35:32 2011] [error] [client 127.0.0.1] Premature end of > script headers: test.cgi > > As you can see above it also recorded my attempt of opening the > test.cgi file that you instructed me to create, which resulted in the > same Internal Server Error screen. > > I see two copies of ActivePerl, one with build 5.8.4 and one with > 5.12.4 so I uninstalled then 5.8.4 version, which did not help solve > the problem. Most folders in my previous PATH value do not exist > anymore, and I have deleted any folder that contains perl other than > my currently installed perl directory. I may need to do another fresh > install of perl and/or TPP because even GUI gives me the internal > server error screen now. > > Thanks for any other tips. > > Regards, > Chris > > On Oct 23, 6:36 pm, Vishal Swaroop <[email protected]> wrote: > > > > > > > > > Hi Chris, > > > In this URLhttp://flic.kr/p/axzsk8thereare multiple files, TPP log shows > > some permission issue. > > > Can you try fresh and send the latest log file from "C:\tmp" and see if > > there is any thing in Apache logs ? > > > Please check if simple CGI works... > > Create "test.cgi" under "C:\Inetpub\tpp-bin" and add this content, the try > > http:/localhost:8080/tpp-bin/test.cgi > > #!C:/Perl/bin/perl > > print "Content-type:text/html\n\n"; > > print "OK"; > > > Also, looks like there are multiple installation of perl as per your path... > > > On Fri, Oct 21, 2011 at 1:23 PM, Chris L <[email protected]> wrote: > > > Hi Vishal and all, > > > I am doing step 7: "Visualize LC-MS/MS data using Pep3D " in TPP Demo > > > 2009 (http://tools.proteomecenter.org/wiki/index.php? > > > title=TPP_Demo2009) > > > a) I had C:\tmp to begin with > > > b) I am using firefox. I tried to open it with IE6 and encountered the > > > same problem. > > > c) I did not have user variable WEBSERVER_ROOT and had to create one > > > I had PATH's value as > > > C:\Inetpub\tpp-bin;C:\Program Files\Perl\site\bin;C:\Program Files\Perl > > > \bin;C:\Xcalibur\system\programs;C:\Program Files\Thermo\Foundation;C: > > > \cygwin\usr\X11R6\bin;C:\cygwin\bin;C:\Perl\site\bin;C:\Perl\bin;J: > > > \oracle\ora92\bin;C:\Program Files\Oracle\jre\1.1.8\bin;C:\Perl\bin; > > > %SystemRoot%\system32;%SystemRoot%;%SystemRoot%\System32\Wbem;C: > > > \Program Files\Intel\DMIX;C:\cygwin\usr\X11R6\bin;C:\cygwin\bin;C: > > > \Program Files\QuickTime\QTSystem\;C:\strawberry\c\bin;C:\strawberry > > > \perl\site\bin;C:\strawberry\perl\bin > > > so I changed it to yours, and rebooted the computer, which still did > > > not solve the problem. > > > d) Heres my snippet of "httpd.conf" in Apache > > > # > > > # Begin settings for the Trans Proteomic Pipeline > > > # > > > Alias /tpp-bin "C:/Inetpub/tpp-bin" > > > <Directory "C:/Inetpub/tpp-bin"> > > > Options Indexes MultiViews ExecCGI > > > AllowOverride None > > > Order allow,deny > > > Allow from all > > > > AddHandler cgi-script .cgi .pl > > > ScriptInterpreterSource Registry > > > > PassEnv WEBSERVER_ROOT > > > PassEnv WEBSERVER_TMP > > > </Directory> > > > > Alias /ISB "C:/Inetpub/wwwroot/ISB" > > > > Alias /schema "C:/Inetpub/wwwroot/schema" > > > > <Directory "C:/Inetpub/wwwroot"> > > > Options Indexes MultiViews Includes > > > AllowOverride None > > > Order allow,deny > > > Allow from all > > > > AddType text/html .shtml > > > AddHandler server-parsed .shtml > > > > PassEnv WEBSERVER_ROOT > > > PassEnv WEBSERVER_TMP > > > </Directory> > > > # > > > # End settings for the Trans Proteomic Pipeline > > > # > > > > Thanks in advance for your advices. > > > > Regards, > > > Chris > > > > On Oct 20, 5:39 pm, Vishal Swaroop <[email protected]> wrote: > > > > Hi Chris, > > > > > Good to know that it worked.. > > > > > I am not sure about step7 (please send me the url you are referring). > > > > > I am sure there were lot of things dependent on OS.. may be try this... > > > > restart after if changing variables as I think System variable change > > > > requires restart but not user variable change... so just re-start.. :) > > > > > a) I assume you have default data directory i.e. "C:" Check if you have > > > > "C:\tmp", if not then create it. > > > > b) Which browser you are using, I am using IE8 and it works fine. > > > > c) Right click : "My Computer">Properties>Advanced Tab> Environment > > > > variables > > > > Check User variable : > > > > Variable name : WEBSERVER_ROOT > > > > Variable value : C:\Inetpub\wwwroot > > > > > Check System Variables : > > > > Variable name "PATH" should have > > > > C:\Inetpub\tpp-bin;C:\Perl\site\bin;C:\Perl\bin; > > > > > d) Here is snippet of Apache "httpd.conf" file which you can compare.. > > > > > # > > > > # Begin settings for the Trans Proteomic Pipeline > > > > # > > > > > # Add 5-hour timeout > > > > Timeout 18000 > > > > > AddType text/html .shtml > > > > AddHandler server-parsed .shtml > > > > > SetEnv WEBSERVER_ROOT C:/Inetpub/wwwroot > > > > SetEnv WEBSERVER_URLhttp://localhost:81 > > > > > Alias /tpp-bin "C:/Inetpub/tpp-bin" > > > > <Directory "C:/Inetpub/tpp-bin"> > > > > Options Indexes MultiViews ExecCGI > > > > AllowOverride None > > > > Order allow,deny > > > > Allow from all > > > > > AddHandler cgi-script .cgi .pl > > > > ScriptInterpreterSource Registry > > > > PassEnv WEBSERVER_ROOT > > > > </Directory> > > > > > Alias /ISB "C:/Inetpub/wwwroot/ISB" > > > > Alias /isb "C:/Inetpub/wwwroot/ISB" > > > > <Directory "C:/Inetpub/wwwroot/ISB"> > > > > Options Indexes MultiViews Includes ExecCGI > > > > AllowOverride None > > > > Order allow,deny > > > > Allow from all > > > > > AddType text/html .shtml > > > > AddHandler server-parsed .shtml > > > > PassEnv WEBSERVER_ROOT > > > > </Directory> > > > > > On Thu, Oct 20, 2011 at 7:02 PM, Chris L <[email protected]> wrote: > > > > > Hi all, > > > > > I am still encountering problem with tutorial step 6 which I am > > > > > ignoring for now. > > > > > In step 7, I am not able to open pepXML viewer for my interact.pep.xml > > > > > and here's the screen I get when trying to open it: > > > > >http://flic.kr/p/axzsk8 > > > > > Any tip appreciated. Thanks again. > > > > > > Regards, > > > > > Chris > > > > > > On Oct 20, 3:39 pm, Chris L <[email protected]> wrote: > > > > > > Changing the domain to localhost:8080 solved the problem. > > > > > > Thanks a lot Vishal. > > > > > > > Regards, > > > > > > Chris > > > > > > > On Oct 19, 6:55 am, Vishal Swaroop <[email protected]> wrote: > > > > > > > > Which browser you are using, firefox ?, try using IE or other > > > > > > > > First check if Apache is configured correctly, > > > > > > > tryhttp://localhost, > > > you > > > > > > > should see "It works!" message on browser, if you have port other > > > than > > > > > > > default (80) then usehttp://localhost:<your port> > > > > > > > > Then try http://<localhost>:<port>/tpp-bin/tpp_gui.pl, if you have > > > not > > > > > > > changed the port then it should be > > > > >http://localhost/tpp-bin/tpp_gui.pl > > > > > > > > ..\Apache...\conf\httpd.conf should have information of host and > > > port. > > > > > > > > Hope this helps.. > > > > > > > > On Tue, Oct 18, 2011 at 7:46 PM, Chris L <[email protected]> wrote: > > > > > > > > localhost/tpp-bin/tpp_gui.pl > > > > > > > > > The web browser changes it towww.localhost.comautomatically. > > > > > > > > > Chris > > > > > > > > > On Oct 18, 4:44 pm, Chris L <[email protected]> wrote: > > > > > > > > > No, I havehttp://www.localhost.com/tpp-bin/tpp_gui.pl > > > > > > > > > Formatting of my post caused the confusion > > > > > > > > > > Regards, > > > > > > > > > Chris > > > > > > > > > > On Oct 18, 4:19 pm, "Vensel, William" < > > > [email protected] > > > > > > > > > > wrote: > > > > > > > > > > > Hi Chris, > > > > > > > > > > > Is there a blank space in yur web address? // Local vs > > > //local > > > > > > > > > > > Bill > > > > > > > > > > > -----Original Message----- > > > > > > > > > > From: [email protected] [mailto: > > > > > > > > [email protected]] On Behalf Of Chris L > > > > > > > > > > Sent: Tuesday, October 18, 2011 3:28 PM > > > > > > > > > > To: spctools-discuss > > > > > > > > > > Subject: [spctools-discuss] Re: TPP Demo 2009 > > > > > > > > > > > Hi Luis and all, > > > > > > > > > > > I have uninstalled Microsoft IIS from the windows component > > > > > (running > > > > > > > > > > windows XP) and re-installed TPP v4.5 with the default > > > > > > > > > > Apache > > > > > > > > > > webserver. Now the problem is when I try to access the GUI > > > > > (http:// > > ... > > read more » -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
