Hi Chris, Good to know that it worked..
I am not sure about step7 (please send me the url you are referring). I am sure there were lot of things dependent on OS.. may be try this... restart after if changing variables as I think System variable change requires restart but not user variable change... so just re-start.. :) a) I assume you have default data directory i.e. "C:" Check if you have "C:\tmp", if not then create it. b) Which browser you are using, I am using IE8 and it works fine. c) Right click : "My Computer">Properties>Advanced Tab> Environment variables Check User variable : Variable name : WEBSERVER_ROOT Variable value : C:\Inetpub\wwwroot Check System Variables : Variable name "PATH" should have C:\Inetpub\tpp-bin;C:\Perl\site\bin;C:\Perl\bin; d) Here is snippet of Apache "httpd.conf" file which you can compare.. # # Begin settings for the Trans Proteomic Pipeline # # Add 5-hour timeout Timeout 18000 AddType text/html .shtml AddHandler server-parsed .shtml SetEnv WEBSERVER_ROOT C:/Inetpub/wwwroot SetEnv WEBSERVER_URL http://localhost:81 Alias /tpp-bin "C:/Inetpub/tpp-bin" <Directory "C:/Inetpub/tpp-bin"> Options Indexes MultiViews ExecCGI AllowOverride None Order allow,deny Allow from all AddHandler cgi-script .cgi .pl ScriptInterpreterSource Registry PassEnv WEBSERVER_ROOT </Directory> Alias /ISB "C:/Inetpub/wwwroot/ISB" Alias /isb "C:/Inetpub/wwwroot/ISB" <Directory "C:/Inetpub/wwwroot/ISB"> Options Indexes MultiViews Includes ExecCGI AllowOverride None Order allow,deny Allow from all AddType text/html .shtml AddHandler server-parsed .shtml PassEnv WEBSERVER_ROOT </Directory> On Thu, Oct 20, 2011 at 7:02 PM, Chris L <[email protected]> wrote: > Hi all, > I am still encountering problem with tutorial step 6 which I am > ignoring for now. > In step 7, I am not able to open pepXML viewer for my interact.pep.xml > and here's the screen I get when trying to open it: > http://flic.kr/p/axzsk8 > Any tip appreciated. Thanks again. > > Regards, > Chris > > > On Oct 20, 3:39 pm, Chris L <[email protected]> wrote: > > Changing the domain to localhost:8080 solved the problem. > > Thanks a lot Vishal. > > > > Regards, > > Chris > > > > On Oct 19, 6:55 am, Vishal Swaroop <[email protected]> wrote: > > > > > > > > > > > > > > > > > Which browser you are using, firefox ?, try using IE or other > > > > > First check if Apache is configured correctly, tryhttp://localhost, you > > > should see "It works!" message on browser, if you have port other than > > > default (80) then usehttp://localhost:<your port> > > > > > Then try http://<localhost>:<port>/tpp-bin/tpp_gui.pl, if you have not > > > changed the port then it should be > http://localhost/tpp-bin/tpp_gui.pl > > > > > ..\Apache...\conf\httpd.conf should have information of host and port. > > > > > Hope this helps.. > > > > > On Tue, Oct 18, 2011 at 7:46 PM, Chris L <[email protected]> wrote: > > > > localhost/tpp-bin/tpp_gui.pl > > > > > > The web browser changes it towww.localhost.comautomatically. > > > > > > Chris > > > > > > On Oct 18, 4:44 pm, Chris L <[email protected]> wrote: > > > > > No, I havehttp://www.localhost.com/tpp-bin/tpp_gui.pl > > > > > Formatting of my post caused the confusion > > > > > > > Regards, > > > > > Chris > > > > > > > On Oct 18, 4:19 pm, "Vensel, William" <[email protected] > > > > > > > wrote: > > > > > > > > Hi Chris, > > > > > > > > Is there a blank space in yur web address? // Local vs //local > > > > > > > > Bill > > > > > > > > -----Original Message----- > > > > > > From: [email protected] [mailto: > > > > [email protected]] On Behalf Of Chris L > > > > > > Sent: Tuesday, October 18, 2011 3:28 PM > > > > > > To: spctools-discuss > > > > > > Subject: [spctools-discuss] Re: TPP Demo 2009 > > > > > > > > Hi Luis and all, > > > > > > > > I have uninstalled Microsoft IIS from the windows component > (running > > > > > > windows XP) and re-installed TPP v4.5 with the default Apache > > > > > > webserver. Now the problem is when I try to access the GUI > (http:// > > > > > > localhost/tpp-bin/tpp_gui.pl), I get a blank page. Refreshing > the page > > > > > > and rebooting doesn't help. Any tips and advice appreciated. > > > > > > > > Sorry for all the miniscule questions and thanks again for being > > > > > > patient. > > > > > > > > Regards, > > > > > > Chris > > > > > > > > On Oct 14, 4:11 pm, Luis Mendoza < > [email protected]> > > > > > > wrote: > > > > > > > Hello Chris, > > > > > > > From the "timeout" error screenshot, it seems that you are > using the > > > > IIS > > > > > > > server. The TPP does not support this web server; instead we > > > > recommend that > > > > > > > you install and run the Apache web server -- which is bundled > and > > > > installed > > > > > > > with the TPP (provided you check the default boxes in the > install > > > > wizard). > > > > > > > > > Hope this helps, > > > > > > > --Luis > > > > > > > > > On Fri, Oct 14, 2011 at 4:04 PM, Chris L <[email protected]> > wrote: > > > > > > > > Dear all, > > > > > > > > > > I am experimenting with the TPP demo 2009 (http:// > > > > > > > > tools.proteomecenter.org/wiki/index.php?title=TPP_Demo2009) > and > > > > > > > > encountered two problems. > > > > > > > > > > First, for step 6: Validation of Peptide-Spectrum assignments > with > > > > > > > > PeptideProphet, I can never get past the Run XInteract step. > My > > > > > > > > command does not finish running even after over a day! > (screen: > > > > > > > >http://flic.kr/p/avNB4R) > > > > > > > > > > Second, when I am trying step 7: Visualize LC-MS/MS data > using > > > > Pep3D. > > > > > > > > My browser tab shows "Connecting..." and a blank page that > does not > > > > > > > > load and eventually turns into a CGI error page (screen: > > > > > > > >http://flic.kr/p/avNAXk) > > > > > > > > > > Any suggestion appreciated. Thank you. > > > > > > > > > > Regards, > > > > > > > > Chris > > > > > > > > > > -- > > > > > > > > You received this message because you are subscribed to the > Google > > > > Groups > > > > > > > > "spctools-discuss" group. > > > > > > > > To post to this group, send email to > > > > [email protected]. > > > > > > > > To unsubscribe from this group, send email to > > > > > > > > [email protected]. > > > > > > > > For more options, visit this group at > > > > > > > >http://groups.google.com/group/spctools-discuss?hl=en. > > > > > > > > -- > > > > > > You received this message because you are subscribed to the > Google > > > > Groups "spctools-discuss" group. > > > > > > To post to this group, send email to > [email protected] > > > > . > > > > > > To unsubscribe from this group, send email to > > > > [email protected]. > > > > > > For more options, visit this group athttp:// > > > > groups.google.com/group/spctools-discuss?hl=en. > > > > > > -- > > > > You received this message because you are subscribed to the Google > Groups > > > > "spctools-discuss" group. > > > > To post to this group, send email to > [email protected]. > > > > To unsubscribe from this group, send email to > > > > [email protected]. > > > > For more options, visit this group at > > > >http://groups.google.com/group/spctools-discuss?hl=en. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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