Hi Chris, In this URL http://flic.kr/p/axzsk8 there are multiple files, TPP log shows some permission issue.
Can you try fresh and send the latest log file from "C:\tmp" and see if there is any thing in Apache logs ? Please check if simple CGI works... Create "test.cgi" under "C:\Inetpub\tpp-bin" and add this content, the try http:/localhost:8080/tpp-bin/test.cgi #!C:/Perl/bin/perl print "Content-type:text/html\n\n"; print "OK"; Also, looks like there are multiple installation of perl as per your path... On Fri, Oct 21, 2011 at 1:23 PM, Chris L <[email protected]> wrote: > Hi Vishal and all, > I am doing step 7: "Visualize LC-MS/MS data using Pep3D " in TPP Demo > 2009 (http://tools.proteomecenter.org/wiki/index.php? > title=TPP_Demo2009) > a) I had C:\tmp to begin with > b) I am using firefox. I tried to open it with IE6 and encountered the > same problem. > c) I did not have user variable WEBSERVER_ROOT and had to create one > I had PATH's value as > C:\Inetpub\tpp-bin;C:\Program Files\Perl\site\bin;C:\Program Files\Perl > \bin;C:\Xcalibur\system\programs;C:\Program Files\Thermo\Foundation;C: > \cygwin\usr\X11R6\bin;C:\cygwin\bin;C:\Perl\site\bin;C:\Perl\bin;J: > \oracle\ora92\bin;C:\Program Files\Oracle\jre\1.1.8\bin;C:\Perl\bin; > %SystemRoot%\system32;%SystemRoot%;%SystemRoot%\System32\Wbem;C: > \Program Files\Intel\DMIX;C:\cygwin\usr\X11R6\bin;C:\cygwin\bin;C: > \Program Files\QuickTime\QTSystem\;C:\strawberry\c\bin;C:\strawberry > \perl\site\bin;C:\strawberry\perl\bin > so I changed it to yours, and rebooted the computer, which still did > not solve the problem. > d) Heres my snippet of "httpd.conf" in Apache > # > # Begin settings for the Trans Proteomic Pipeline > # > Alias /tpp-bin "C:/Inetpub/tpp-bin" > <Directory "C:/Inetpub/tpp-bin"> > Options Indexes MultiViews ExecCGI > AllowOverride None > Order allow,deny > Allow from all > > AddHandler cgi-script .cgi .pl > ScriptInterpreterSource Registry > > PassEnv WEBSERVER_ROOT > PassEnv WEBSERVER_TMP > </Directory> > > Alias /ISB "C:/Inetpub/wwwroot/ISB" > > Alias /schema "C:/Inetpub/wwwroot/schema" > > <Directory "C:/Inetpub/wwwroot"> > Options Indexes MultiViews Includes > AllowOverride None > Order allow,deny > Allow from all > > AddType text/html .shtml > AddHandler server-parsed .shtml > > PassEnv WEBSERVER_ROOT > PassEnv WEBSERVER_TMP > </Directory> > # > # End settings for the Trans Proteomic Pipeline > # > > Thanks in advance for your advices. > > Regards, > Chris > > On Oct 20, 5:39 pm, Vishal Swaroop <[email protected]> wrote: > > Hi Chris, > > > > Good to know that it worked.. > > > > I am not sure about step7 (please send me the url you are referring). > > > > I am sure there were lot of things dependent on OS.. may be try this... > > restart after if changing variables as I think System variable change > > requires restart but not user variable change... so just re-start.. :) > > > > a) I assume you have default data directory i.e. "C:" Check if you have > > "C:\tmp", if not then create it. > > b) Which browser you are using, I am using IE8 and it works fine. > > c) Right click : "My Computer">Properties>Advanced Tab> Environment > > variables > > Check User variable : > > Variable name : WEBSERVER_ROOT > > Variable value : C:\Inetpub\wwwroot > > > > Check System Variables : > > Variable name "PATH" should have > > C:\Inetpub\tpp-bin;C:\Perl\site\bin;C:\Perl\bin; > > > > d) Here is snippet of Apache "httpd.conf" file which you can compare.. > > > > # > > # Begin settings for the Trans Proteomic Pipeline > > # > > > > # Add 5-hour timeout > > Timeout 18000 > > > > AddType text/html .shtml > > AddHandler server-parsed .shtml > > > > SetEnv WEBSERVER_ROOT C:/Inetpub/wwwroot > > SetEnv WEBSERVER_URLhttp://localhost:81 > > > > Alias /tpp-bin "C:/Inetpub/tpp-bin" > > <Directory "C:/Inetpub/tpp-bin"> > > Options Indexes MultiViews ExecCGI > > AllowOverride None > > Order allow,deny > > Allow from all > > > > AddHandler cgi-script .cgi .pl > > ScriptInterpreterSource Registry > > PassEnv WEBSERVER_ROOT > > </Directory> > > > > Alias /ISB "C:/Inetpub/wwwroot/ISB" > > Alias /isb "C:/Inetpub/wwwroot/ISB" > > <Directory "C:/Inetpub/wwwroot/ISB"> > > Options Indexes MultiViews Includes ExecCGI > > AllowOverride None > > Order allow,deny > > Allow from all > > > > AddType text/html .shtml > > AddHandler server-parsed .shtml > > PassEnv WEBSERVER_ROOT > > </Directory> > > > > > > > > > > > > > > > > On Thu, Oct 20, 2011 at 7:02 PM, Chris L <[email protected]> wrote: > > > Hi all, > > > I am still encountering problem with tutorial step 6 which I am > > > ignoring for now. > > > In step 7, I am not able to open pepXML viewer for my interact.pep.xml > > > and here's the screen I get when trying to open it: > > >http://flic.kr/p/axzsk8 > > > Any tip appreciated. Thanks again. > > > > > Regards, > > > Chris > > > > > On Oct 20, 3:39 pm, Chris L <[email protected]> wrote: > > > > Changing the domain to localhost:8080 solved the problem. > > > > Thanks a lot Vishal. > > > > > > Regards, > > > > Chris > > > > > > On Oct 19, 6:55 am, Vishal Swaroop <[email protected]> wrote: > > > > > > > Which browser you are using, firefox ?, try using IE or other > > > > > > > First check if Apache is configured correctly, tryhttp://localhost, > you > > > > > should see "It works!" message on browser, if you have port other > than > > > > > default (80) then usehttp://localhost:<your port> > > > > > > > Then try http://<localhost>:<port>/tpp-bin/tpp_gui.pl, if you have > not > > > > > changed the port then it should be > > >http://localhost/tpp-bin/tpp_gui.pl > > > > > > > ..\Apache...\conf\httpd.conf should have information of host and > port. > > > > > > > Hope this helps.. > > > > > > > On Tue, Oct 18, 2011 at 7:46 PM, Chris L <[email protected]> wrote: > > > > > > localhost/tpp-bin/tpp_gui.pl > > > > > > > > The web browser changes it towww.localhost.comautomatically. > > > > > > > > Chris > > > > > > > > On Oct 18, 4:44 pm, Chris L <[email protected]> wrote: > > > > > > > No, I havehttp://www.localhost.com/tpp-bin/tpp_gui.pl > > > > > > > Formatting of my post caused the confusion > > > > > > > > > Regards, > > > > > > > Chris > > > > > > > > > On Oct 18, 4:19 pm, "Vensel, William" < > [email protected] > > > > > > > > > wrote: > > > > > > > > > > Hi Chris, > > > > > > > > > > Is there a blank space in yur web address? // Local vs > //local > > > > > > > > > > Bill > > > > > > > > > > -----Original Message----- > > > > > > > > From: [email protected] [mailto: > > > > > > [email protected]] On Behalf Of Chris L > > > > > > > > Sent: Tuesday, October 18, 2011 3:28 PM > > > > > > > > To: spctools-discuss > > > > > > > > Subject: [spctools-discuss] Re: TPP Demo 2009 > > > > > > > > > > Hi Luis and all, > > > > > > > > > > I have uninstalled Microsoft IIS from the windows component > > > (running > > > > > > > > windows XP) and re-installed TPP v4.5 with the default Apache > > > > > > > > webserver. Now the problem is when I try to access the GUI > > > (http:// > > > > > > > > localhost/tpp-bin/tpp_gui.pl), I get a blank page. > Refreshing > > > the page > > > > > > > > and rebooting doesn't help. Any tips and advice appreciated. > > > > > > > > > > Sorry for all the miniscule questions and thanks again for > being > > > > > > > > patient. > > > > > > > > > > Regards, > > > > > > > > Chris > > > > > > > > > > On Oct 14, 4:11 pm, Luis Mendoza < > > > [email protected]> > > > > > > > > wrote: > > > > > > > > > Hello Chris, > > > > > > > > > From the "timeout" error screenshot, it seems that you are > > > using the > > > > > > IIS > > > > > > > > > server. The TPP does not support this web server; instead > we > > > > > > recommend that > > > > > > > > > you install and run the Apache web server -- which is > bundled > > > and > > > > > > installed > > > > > > > > > with the TPP (provided you check the default boxes in the > > > install > > > > > > wizard). > > > > > > > > > > > Hope this helps, > > > > > > > > > --Luis > > > > > > > > > > > On Fri, Oct 14, 2011 at 4:04 PM, Chris L <[email protected]> > > > wrote: > > > > > > > > > > Dear all, > > > > > > > > > > > > I am experimenting with the TPP demo 2009 (http:// > > > > > > > > > > > tools.proteomecenter.org/wiki/index.php?title=TPP_Demo2009) > > > and > > > > > > > > > > encountered two problems. > > > > > > > > > > > > First, for step 6: Validation of Peptide-Spectrum > assignments > > > with > > > > > > > > > > PeptideProphet, I can never get past the Run XInteract > step. > > > My > > > > > > > > > > command does not finish running even after over a day! > > > (screen: > > > > > > > > > >http://flic.kr/p/avNB4R) > > > > > > > > > > > > Second, when I am trying step 7: Visualize LC-MS/MS data > > > using > > > > > > Pep3D. > > > > > > > > > > My browser tab shows "Connecting..." and a blank page > that > > > does not > > > > > > > > > > load and eventually turns into a CGI error page (screen: > > > > > > > > > >http://flic.kr/p/avNAXk) > > > > > > > > > > > > Any suggestion appreciated. Thank you. > > > > > > > > > > > > Regards, > > > > > > > > > > Chris > > > > > > > > > > > > -- > > > > > > > > > > You received this message because you are subscribed to > the > > > Google > > > > > > Groups > > > > > > > > > > "spctools-discuss" group. > > > > > > > > > > To post to this group, send email to > > > > > > [email protected]. > > > > > > > > > > To unsubscribe from this group, send email to > > > > > > > > > > [email protected]. > > > > > > > > > > For more options, visit this group at > > > > > > > > > >http://groups.google.com/group/spctools-discuss?hl=en. > > > > > > > > > > -- > > > > > > > > You received this message because you are subscribed to the > > > Google > > > > > > Groups "spctools-discuss" group. > > > > > > > > To post to this group, send email to > > > [email protected] > > > > > > . > > > > > > > > To unsubscribe from this group, send email to > > > > > > [email protected]. > > > > > > > > For more options, visit this group athttp:// > > > > > > groups.google.com/group/spctools-discuss?hl=en. > > > > > > > > -- > > > > > > You received this message because you are subscribed to the > Google > > > Groups > > > > > > "spctools-discuss" group. > > > > > > To post to this group, send email to > > > [email protected]. > > > > > > To unsubscribe from this group, send email to > > > > > > [email protected]. > > > > > > For more options, visit this group at > > > > > >http://groups.google.com/group/spctools-discuss?hl=en. > > > > > -- > > > You received this message because you are subscribed to the Google > Groups > > > "spctools-discuss" group. > > > To post to this group, send email to [email protected] > . > > > To unsubscribe from this group, send email to > > > [email protected]. > > > For more options, visit this group at > > >http://groups.google.com/group/spctools-discuss?hl=en. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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