Dear all In my iProphet output I get for each spectrum a separate iProphet probability and I was wondering why, because in the iProphet paper it says that "as the main outcome, iProphet permits the calculation of more accurate posterior probabilities and FDR estimates at the level of unique peptide sequences, where ONE probability is used for all sequence identical PSMs observed [...]". What is now this one probability? Is it just the highest of all the iProphet probabilities for each peptide?
Many thanks in advance! Olga -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
