Hi Goxy,
You can also use msconvert to produce an mzXML file; the latest release of
TPP (4.5.1) has that option in the corresponding page in Petunia ("Convert
to mzXML instead of mzML"). Hope this helps,
--Luis
2012/1/7 Goran Mitulović <[email protected]>
> Well,it might be, that those resources are substantially larger, andt that
> applies to large files but it cannot be true for a simple search applied on
> separated tryptic BSA peptides (30 min gradient). We are installing quite a
> large server and will test the search on that one.
> best regards
> Goxy
>
>
>
> On Wed, Jan 4, 2012 at 1:08 AM, Joseph Slagel <
> [email protected]> wrote:
>
>> Goxy,
>>
>> I'm sorry but I don't quite understand. If your saying that a mzML file
>> searched at the GPM takes a very long to complete locally on your computer
>> but finishes quickly at the GPM I would say that this is not surprising at
>> all. The hardware and system resources are very likely to be much greater
>> than what you have locally.
>>
>> -joe
>>
>>
>>
>> 2011/12/29 Goran Mitulović <[email protected]>
>>
>>> Hi Joe,
>>> that is what I do. I do use msconvert, but it still does not work when
>>> using it within TPP. Using it as a "stand alone" from the command line is
>>> OK. It converts .raw to mzml, however, the searches will take an eternity
>>> to complete. Using The GPM it takes about 10 minutes for exactly the same
>>> mzml file.
>>> Kind regards
>>> Goxy
>>>
>>>
>>> On Thu, Dec 29, 2011 at 6:29 PM, Joseph Slagel <
>>> [email protected]> wrote:
>>>
>>>> Goxy,
>>>>
>>>> Please try using msconvert to do your conversions. The program readw
>>>> is no longer actively supported.
>>>>
>>>> -Joe
>>>>
>>>>
>>>> 2011/12/29 Goran Mitulović <[email protected]>
>>>>
>>>>>
>>>>> Hello,
>>>>> I have a problem installing TPP v4.5 Rapture rev 1. The message is:
>>>>>
>>>>>
>>>>>
>>>>> OS is Win 7, I do install using Administrator rights. When ignoring
>>>>> this, another message pops up:
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> Upon completing installation, the TPP does not convert rwa into mzML
>>>>> or mzxnl and generates the following error:
>>>>>
>>>>> c:\Inetpub\tpp-bin\ReAdW -v --mzXML -z -g
>>>>> c:/Inetpub/wwwroot/ISB/data/jinQua/111111_P.raw
>>>>>
>>>>> ------------------------------
>>>>>
>>>>> The system cannot find message text for message number 0x2331 in the
>>>>> message file for Application.
>>>>>
>>>>> *Command FAILED
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> *
>>>>>
>>>>> The analysis of mzml files generated with ms convert will take days,
>>>>> although the files are not as large (approx 4MB)
>>>>>
>>>>> Thanks!
>>>>>
>>>>> --
>>>>> Goxy
>>>>>
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>>>>>
>>>>
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>>>
>>>
>>>
>>> --
>>> Goxy
>>>
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>>
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>
>
>
> --
> Goxy
>
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