Hi David, PTMProphet is performing well for us under Windows7. We would like to install it on Ubuntu though and I was wondering whether you could give us an idea of how to install it there without installing the rest of the TPP with it. We have an older version of the TPP running on a labkey server and I have to avoid to screw this installation up.
Thanks, Maik On 23 Jan., 20:17, David Shteynberg <[email protected]> wrote: > Hi Andreas, > > This software is still in early testing, thanks for trying it out. > > When I run the software it is done after PeptideProphet or iProphet > processing. > > You can either specify the exact mod to use or if nothing is > givenPTMProphetuses a default of STY,79.9799 . > > The latest version of this software is in SVN trunk. If you need me > to troubleshoot your specific datafile please let me know. > > -David > > On Thu, Jan 12, 2012 at 10:39 AM, Andreas Quandt > > > > > > > > <[email protected]> wrote: > > dear list, > > > i ran some tests with ptmprophetparser (tpp v4.5.1) on the output of > > xtandem, omssa and myrimatch after xinteract has been run on the original > > search engine output. > > unfortunately, each test produced a different error: > > >> PTMProphetParser interact_myrimatch.pep.xml > > Unknown file type. No file loaded. > > Segmentation fault > > >> PTMProphetParser interact_tandem.pep.xml > > .................................... > > .................................... > > .................................... > > (continues like that and does not stop even after 1h) > > > $ /cluster/apps/tpp/4.5.1/bin/PTMProphetParser interact_omssa.pep.xml > > Failed to open input file > > '/cluster/work/scr3/quandtan/workflow/614/0/0/omssa/vagas_B1110_086.pep.xml.mzXML'. > > Segmentation fault > > > it would be greatly appreciated if one of you, especially david ;-), could > > give me some advice on how to solve the problem. > > furthermore, i would like to kindly ask for help regading two other > > questions: > > - isptmprophetis better applied after running xinteract or iprophet? > > - what is the difference of specifying e.g. STY,80 as parameter or not > > specific modification at all? > > > many thanks in advance for any help from your side! > > > cheers, > > andreas > > > -- > > You received this message because you are subscribed to the Google Groups > > "spctools-discuss" group. > > To post to this group, send email to [email protected]. > > To unsubscribe from this group, send email to > > [email protected]. > > For more options, visit this group at > >http://groups.google.com/group/spctools-discuss?hl=en. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
