Hello Matt, Thanks for the comments. I tried converting the raw data to mzML instead of mzXML as well. It didn't work. All I got in the mzML file is the column heads, but no content.
Harry On Feb 1, 1:40 pm, Matthew Chambers <[email protected]> wrote: > That's not an msconvert warning. Msconvert would handle his MRM data fine as > mzML, not mzXML. Does > TPP work with mzML chromatograms yet? > > -Matt > > On 2/1/2012 3:35 PM, Joseph Slagel wrote: > > > > > > > > > Harry, > > > I'm not sure I can be of any more help. I'd suggest you forward your > > question to the ProteoWizard's > > mailing list ([email protected] > > <mailto:[email protected]><mailto:[email protected]>) > > and I'm sure > > you'll get a answer. > > > -Joe > > > On Tue, Jan 31, 2012 at 11:18 AM, Harry <[email protected] > > <mailto:[email protected]>> wrote: > > > Hello Joe, > > > Thank you for replying my question. > > > The error message I got looks like this: > > > ... > > Preprocessing function 97 > > !!Warning!!: ignoring function 97 with type MRM > > Preprocessing function 98 > > !!Warning!!: ignoring function 98 with type MRM > > Preprocessing function 99 > > !!Warning!!: ignoring function 99 with type MRM > > no scans found, exiting with error > > END OUTPUT > > RETURN CODE:65280 > > ###### End Command Execution ###### > > # All finished at Tue Jan 31 10:57:14 2012 > > # END COMMAND BLOCK > > > I also tried msconvert. The program did generate a mzXML file from > > the raw data, but there is no actual data (MRM transitions and their > > signal intensities) in the mzXML file. Would it be more useful to you > > to see the problem if I send you the mzXML file? > > > Thank you for your time. > > > Harry > > > On Jan 31, 10:40 am, Joseph Slagel <[email protected] > > <mailto:[email protected]>> > > wrote: > > > Harry, > > > > What error did you get? Did it look anything like: > > > > [Tue Jan 31 12:33:25 2012] EXECUTING: c:\Inetpub\tpp-bin\ReAdW -v -- > > > mzXML c:/Inetpub/wwwroot/ISB/data/12032011_60min_PaG_XC_HP101_01.raw > > > OUTPUT: > > > The system cannot find message text for message number 0x2331 in the > > > message file for Application. > > > > If so, then please try using msconvert instead of ReAdW. We're no > > longer > > > supporting or bundling this program with TPP. > > > > -Joe > > > > On Mon, Jan 30, 2012 at 1:45 PM, Harry <[email protected] > > <mailto:[email protected]>> wrote: > > > > Hello, > > > > > I was trying to use the mzXML conversion tool in PPT to convert > > some > > > > MRM raw data acquired on a Waters Xevo through direct infusion. The > > > > program could not do it. Has anybody had similar problem? > > > > > Thank you for any ideas and suggestions. > > > > > Harry -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
