Hey everybody:

I like the "mirrored" spectra comparison from Spectrast. I would like
to arbitrarily compare spectrum from small molecule datasets in the
same manner. This would be nice to do from .mgf files since I have
data from multiple instruments/vendors.

This is supported for the tool PlotSpectrast for comparing the
following:

1. File.splib vs File.mzXML
2. File.splib
3. File.splib vs.File.splib

However, .mzXML vs. .mzXML comparisons don't seem to work (program
fails without log file generation). Can I invoke some options at the
command line to make this happen?

Alternatively, is there a way I can generate .splib files while
bypassing all quality filters etc?

Thanks,

-Chris

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