Hi- I currently use ASAPRatio to quantify SILAC samples. I have TPP 4.5.2 and would like to try WaveletQuant. I see in the instructions that it can be implemented by using ASAPRatioPeptideParser -w command line option. However, can I use the TPP via Petunia GUI to do this? I don't have experience using TPP via command line. I tried typing in "-w" into the box under PeptideProphet options "Enter additional options to pass directly to the command-line (expert use only!)", but this didn't seem to do anything different. I don't see a place under ASAPRatio Options for this. Any help would be appreciated!
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