Bump. Has anyone else successfully used the tutorial data? It would help to know, so I can try and narrow down the problem at my end. Thanks.
On Monday, February 25, 2013 2:28:29 PM UTC, Ross wrote: > > Hi all > I'm currently going through the tutorial at > http://tools.proteomecenter.org/wiki/index.php?title=TPP_Demo2009, using > the pre-converted mzML tutorial data . > > At step 4, in the "Convert results to PepXML" section, the conversion is > failing: > > *EXECUTING: cd /usr/local/tpp/data/demo2009/tandem; > /usr/local/tpp/bin/Tandem2XML > /usr/local/tpp/data/demo2009/tandem/OR20080317_S_SILAC-LH_1-1_01.tandem > /usr/local/tpp/data/demo2009/tandem/OR20080317_S_SILAC-LH_1-1_01.tandem.pep.xml > > * > > ERROR: Unsupported search enzyme. > Use one of the following cleavage site specifications: > argc - [R]|{P} > aspn - [X]|[D] > chymotrypsin - [FMWY]|{P} > clostripain - [R]|[X] > cnbr - [M]|{P} > elastase - [AGILV]|{P} > formicacid - [D]|{P} > gluc - [DE]|{P} > gluc_bicarb - [E]|{P} > iodosobenzoate - [W]|[X] > lysc - [K]|{P} > lysc-p - [K]|[X] > lysn - [X]|[K] > lysn_promisc - [X]|[AKRS] > nonspecific - [X]|[X] > pepsina - [FL]|[X] > protein_endopeptidase - [P]|[X] > staph_protease - [E]|[X] > tca - [FMWY]|{P},[KR]|{P},[X]|[D] > trypsin - [KR]|{P} > trypsin/cnbr - [KR]|{P},[M]|{P} > trypsin_gluc - [DEKR]|{P} > > > Can anyone help with this? > Thanks, > R > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. For more options, visit https://groups.google.com/groups/opt_out.
