Issue resolved. User error! Thanks for your help. On Wednesday, March 6, 2013 6:09:58 PM UTC, [email protected] wrote: > > I'll take a look at it. Before we released 4.6.2 I ran through the > tutorial data, but I had started from the beginning and not from the > already converted data. > > -Joe > > > On Wed, Mar 6, 2013 at 1:52 AM, Ross <[email protected] <javascript:>>wrote: > >> Bump. Has anyone else successfully used the tutorial data? It would help >> to know, so I can try and narrow down the problem at my end. >> Thanks. >> >> >> On Monday, February 25, 2013 2:28:29 PM UTC, Ross wrote: >>> >>> Hi all >>> I'm currently going through the tutorial at http://tools.proteomecenter. >>> **org/wiki/index.php?title=TPP_**Demo2009<http://tools.proteomecenter.org/wiki/index.php?title=TPP_Demo2009>, >>> >>> using the pre-converted mzML tutorial data . >>> >>> At step 4, in the "Convert results to PepXML" section, the conversion is >>> failing: >>> >>> *EXECUTING: cd /usr/local/tpp/data/demo2009/tandem; >>> /usr/local/tpp/bin/Tandem2XML /usr/local/tpp/data/demo2009/ >>> tandem/OR20080317_S_SILAC-LH_1-1_01.tandem /usr/local/tpp/data/demo2009/ >>> tandem/OR20080317_S_SILAC-LH_1-1_01.tandem.pep.xml * >>> >>> ERROR: Unsupported search enzyme. >>> Use one of the following cleavage site specifications: >>> argc - [R]|{P} >>> aspn - [X]|[D] >>> chymotrypsin - [FMWY]|{P} >>> clostripain - [R]|[X] >>> cnbr - [M]|{P} >>> elastase - [AGILV]|{P} >>> formicacid - [D]|{P} >>> gluc - [DE]|{P} >>> gluc_bicarb - [E]|{P} >>> iodosobenzoate - [W]|[X] >>> lysc - [K]|{P} >>> lysc-p - [K]|[X] >>> lysn - [X]|[K] >>> lysn_promisc - [X]|[AKRS] >>> nonspecific - [X]|[X] >>> pepsina - [FL]|[X] >>> protein_endopeptidase - [P]|[X] >>> staph_protease - [E]|[X] >>> tca - [FMWY]|{P},[KR]|{P},[X]|[D] >>> trypsin - [KR]|{P} >>> trypsin/cnbr - [KR]|{P},[M]|{P} >>> trypsin_gluc - [DEKR]|{P} >>> >>> >>> Can anyone help with this? >>> Thanks, >>> R >>> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to >> [email protected]<javascript:> >> . >> Visit this group at http://groups.google.com/group/spctools-discuss?hl=en >> . >> For more options, visit https://groups.google.com/groups/opt_out. >> >> >> > >
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