I'll take a look at it. Before we released 4.6.2 I ran through the tutorial data, but I had started from the beginning and not from the already converted data.
-Joe On Wed, Mar 6, 2013 at 1:52 AM, Ross <[email protected]> wrote: > Bump. Has anyone else successfully used the tutorial data? It would help > to know, so I can try and narrow down the problem at my end. > Thanks. > > > On Monday, February 25, 2013 2:28:29 PM UTC, Ross wrote: >> >> Hi all >> I'm currently going through the tutorial at http://tools.proteomecenter.* >> *org/wiki/index.php?title=TPP_**Demo2009<http://tools.proteomecenter.org/wiki/index.php?title=TPP_Demo2009>, >> using the pre-converted mzML tutorial data . >> >> At step 4, in the "Convert results to PepXML" section, the conversion is >> failing: >> >> *EXECUTING: cd /usr/local/tpp/data/demo2009/tandem; >> /usr/local/tpp/bin/Tandem2XML /usr/local/tpp/data/demo2009/ >> tandem/OR20080317_S_SILAC-LH_1-1_01.tandem /usr/local/tpp/data/demo2009/ >> tandem/OR20080317_S_SILAC-LH_1-1_01.tandem.pep.xml * >> >> ERROR: Unsupported search enzyme. >> Use one of the following cleavage site specifications: >> argc - [R]|{P} >> aspn - [X]|[D] >> chymotrypsin - [FMWY]|{P} >> clostripain - [R]|[X] >> cnbr - [M]|{P} >> elastase - [AGILV]|{P} >> formicacid - [D]|{P} >> gluc - [DE]|{P} >> gluc_bicarb - [E]|{P} >> iodosobenzoate - [W]|[X] >> lysc - [K]|{P} >> lysc-p - [K]|[X] >> lysn - [X]|[K] >> lysn_promisc - [X]|[AKRS] >> nonspecific - [X]|[X] >> pepsina - [FL]|[X] >> protein_endopeptidase - [P]|[X] >> staph_protease - [E]|[X] >> tca - [FMWY]|{P},[KR]|{P},[X]|[D] >> trypsin - [KR]|{P} >> trypsin/cnbr - [KR]|{P},[M]|{P} >> trypsin_gluc - [DEKR]|{P} >> >> >> Can anyone help with this? >> Thanks, >> R >> > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. > For more options, visit https://groups.google.com/groups/opt_out. > > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. For more options, visit https://groups.google.com/groups/opt_out.
