Hi all
I'm currently going through the tutorial at
http://tools.proteomecenter.org/wiki/index.php?title=TPP_Demo2009, using
the pre-converted mzML tutorial data .
At step 4, in the "Convert results to PepXML" section, the conversion is
failing:
*EXECUTING: cd /usr/local/tpp/data/demo2009/tandem;
/usr/local/tpp/bin/Tandem2XML
/usr/local/tpp/data/demo2009/tandem/OR20080317_S_SILAC-LH_1-1_01.tandem
/usr/local/tpp/data/demo2009/tandem/OR20080317_S_SILAC-LH_1-1_01.tandem.pep.xml
*
ERROR: Unsupported search enzyme.
Use one of the following cleavage site specifications:
argc - [R]|{P}
aspn - [X]|[D]
chymotrypsin - [FMWY]|{P}
clostripain - [R]|[X]
cnbr - [M]|{P}
elastase - [AGILV]|{P}
formicacid - [D]|{P}
gluc - [DE]|{P}
gluc_bicarb - [E]|{P}
iodosobenzoate - [W]|[X]
lysc - [K]|{P}
lysc-p - [K]|[X]
lysn - [X]|[K]
lysn_promisc - [X]|[AKRS]
nonspecific - [X]|[X]
pepsina - [FL]|[X]
protein_endopeptidase - [P]|[X]
staph_protease - [E]|[X]
tca - [FMWY]|{P},[KR]|{P},[X]|[D]
trypsin - [KR]|{P}
trypsin/cnbr - [KR]|{P},[M]|{P}
trypsin_gluc - [DEKR]|{P}
Can anyone help with this?
Thanks,
R
--
You received this message because you are subscribed to the Google Groups
"spctools-discuss" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to [email protected].
To post to this group, send email to [email protected].
Visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
For more options, visit https://groups.google.com/groups/opt_out.
