Hi The program is still running but it is more than 2 days. The status is showing that the program is running. For generating target-decoy database I used TPPs decoy database and for parameters I used tandem-params which is there in the TPP without any modification.I am attaching tandem-params for your kind perusal.
Thanks Ruchir On Sunday, August 11, 2013 1:11:11 PM UTC-4, David Shteynberg wrote: > > The most likely explanation without any other information is a bad > character in the Decoy database or something with the search parameters. > Posting both would help us get to the root of the issue. When you say it > took two days and failed was the program generating any output or somehow > making progress can you verify that it was actually running? Posting any > output would also be helpful. > > David > On Aug 11, 2013 12:07 AM, "ruchir mishra" <[email protected] <javascript:>> > wrote: > >> Hi >> >> Could anyone please let me know why I have not got any results after 2 >> days when using decoy database but without decoy database I got the result >> within 2 hrs. using Tandem in trans proteomic pipeline. >> >> Thanks >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to >> [email protected]<javascript:> >> . >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/groups/opt_out. >> >> >> > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
tandem_params.xml
Description: XML document
