Thanks David On Sunday, August 11, 2013 5:31:57 PM UTC-4, David Shteynberg wrote:
> If there is no tandem.exe in Task Manager it means tandem is actually not > running. Yet somehow Petunia still think it is running. You will need to > resubmit the search. > > -David > > > On Sun, Aug 11, 2013 at 2:17 PM, ruchir mishra <[email protected]<javascript:> > > wrote: > >> Hi >> >> Yes I am running it on windows 7. There is no file visible in windows. >> There is not an active tandem.exe in my task manager. In TPP it is showing >> that my (command) program is running. This is for the first time I am >> facing this problem. >> >> Thanks >> Ruchir >> >> On Sunday, August 11, 2013 2:44:17 PM UTC-4, David Shteynberg wrote: >> >>> Are you running this on Windows? Is there an active tandem.exe job in >>> your task manager? Is there a file visible in windows containing the >>> results for the 2-day search? >>> >>> -David >>> >>> >>> On Sun, Aug 11, 2013 at 11:02 AM, ruchir mishra <[email protected]>wrote: >>> >>>> Hi >>>> The program is still running but it is more than 2 days. The status is >>>> showing that the program is running. For generating target-decoy database >>>> I >>>> used TPPs decoy database and for parameters I used tandem-params which is >>>> there in the TPP without any modification.I am attaching tandem-params for >>>> your kind perusal. >>>> >>>> Thanks >>>> Ruchir >>>> >>>> >>>> On Sunday, August 11, 2013 1:11:11 PM UTC-4, David Shteynberg wrote: >>>> >>>>> The most likely explanation without any other information is a bad >>>>> character in the Decoy database or something with the search parameters. >>>>> Posting both would help us get to the root of the issue. When you say it >>>>> took two days and failed was the program generating any output or somehow >>>>> making progress can you verify that it was actually running? Posting any >>>>> output would also be helpful. >>>>> >>>>> David >>>>> On Aug 11, 2013 12:07 AM, "ruchir mishra" <[email protected]> wrote: >>>>> >>>>>> Hi >>>>>> >>>>>> Could anyone please let me know why I have not got any results after >>>>>> 2 days when using decoy database but without decoy database I got the >>>>>> result within 2 hrs. using Tandem in trans proteomic pipeline. >>>>>> >>>>>> Thanks >>>>>> >>>>>> -- >>>>>> You received this message because you are subscribed to the Google >>>>>> Groups "spctools-discuss" group. >>>>>> To unsubscribe from this group and stop receiving emails from it, >>>>>> send an email to spctools-discu...@**googlegroups**.com. >>>>>> To post to this group, send email to spctools...@googlegroups.**com. >>>>>> >>>>>> Visit this group at http://groups.google.com/**group** >>>>>> /spctools-discuss <http://groups.google.com/group/spctools-discuss>. >>>>>> For more options, visit >>>>>> https://groups.google.com/**grou**ps/opt_out<https://groups.google.com/groups/opt_out> >>>>>> . >>>>>> >>>>>> >>>>>> >>>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to spctools-discu...@**googlegroups.com. >>>> To post to this group, send email to spctools...@googlegroups.**com. >>>> Visit this group at >>>> http://groups.google.com/**group/spctools-discuss<http://groups.google.com/group/spctools-discuss> >>>> . >>>> For more options, visit >>>> https://groups.google.com/**groups/opt_out<https://groups.google.com/groups/opt_out> >>>> . >>>> >>>> >>>> >>> >>> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to >> [email protected]<javascript:> >> . >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/groups/opt_out. >> >> >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
