Hi, I am able to run successfully the TPP pipeline on one of the mzXML file.But on using TPP on other mzXML file , ProteinProphet is throwing error stating that did you forgot to run PeptideProphet. I have crossed checked all the parameters , they are correct.I am using the latest version of TPP on windows and running it using commandline.
1.tandem input.xml 2.Tandem2XML output.2013_07_24_13_24_28.t.xml output.2013_07_24_13_24_28.pep.xml 3.PeptideProphetParser output.2013_07_24_13_24_28.pep.xml MINPROB=0.2 4.ProteinProphet output.2013_07_24_13_24_28.pep.xml c:\Inetpub\wwwroot\out1.prot.xml P.S. Everytime I am changing the parameters in input.xml file.I am using k-score function. Thanks, Rishika -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
