Actually the problem is this:  Error: 146354 identity scores, but 96591 ion
scores read


Is your dat file complete?  Can you post your dat file somewhere?

-David


On Mon, Oct 21, 2013 at 9:22 AM, David Shteynberg <
[email protected]> wrote:

> Hi Peter,
>
>
> Can you see you if have the same error on a file that does not contain '-'
> in it's file name?
>
> Thanks,
> -David
>
>
> On Mon, Oct 21, 2013 at 6:26 AM, zion <[email protected]> wrote:
>
>> Dear All:
>>
>> I have installed TPP4.6.3,
>> and when converting .dat to .pepxml,
>> there is a error message like this:
>>
>> variable modification 1, delta mass 45.9877 for Methylthio (C):
>>  residues: C
>>  nterm: 0
>>  cterm: 0
>>  protterm: 0
>>
>> variable modification 2, delta mass 15.9949 for Oxidation (M):
>>  residues: M
>>  nterm: 0
>>  cterm: 0
>>  protterm: 0
>>
>> Error: 146354 identity scores, but 96591 ion scores read
>>
>> command "c:\Inetpub\tpp-bin\Mascot2XML c:/Inetpub/wwwroot/ISB/data/CL1-0.dat 
>> -Dc:/Inetpub/wwwroot/ISB/data/SwissProt_57.8.fasta -Etrypsin" failed: 
>> Operation not permitted
>>
>>
>>
>> *Command FAILED*
>> RETURN CODE:256
>>
>> CAN anyone kindly provide solutions to this problem?
>>
>> Thanks a lot!!
>>
>> Peter
>>
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