Hi David : I have made sure that our combine search(combing several mgf to search) causes some corruption in the .dat. Thanks very much for your help!!
Best, -Peter On Thursday, October 24, 2013 12:44:38 AM UTC+8, David Shteynberg wrote: > > New file same problem. Line 1625847 contains corrupted data. You must > check your systems/copying method/Mascot installation, etc . The > problemdoes not appear to be with the TPP here or the Mascot2XML converter > contained within. > > > Best, > -David > > > On Wed, Oct 23, 2013 at 2:30 AM, zion <mercy...@gmail.com <javascript:>>wrote: > >> Hello David, >> >> Sorry, i still found the same problem when i get the correct .dat format, >> Could you please help test this file: >> >> https://docs.google.com/file/d/0B-nLuoS-pq14TmdIX1k5ME52anc/edit?usp=sharing >> >> I still get the same error message: >> >> Error: 144596 identity scores, but 95523 ion scores read >> >> command "c:\Inetpub\tpp-bin\Mascot2XML c:/Inetpub/wwwroot/ISB/data/CL1-5.dat >> -Dc:/Inetpub/wwwroot/ISB/data/SwissProt_57.8.fasta -Etrypsin" failed: >> Operation not permitted >> >> >> *Command FAILED* >> >> >> RETURN CODE:256 >> Many thanks!! >> >> Peter >> >> >> >> On Wednesday, October 23, 2013 1:09:31 PM UTC+8, zion wrote: >>> >>> Hello David, >>> >>> The problem now is solved. >>> >>> Many thanks. >>> >>> Peter. >>> >>> On Wednesday, October 23, 2013 7:02:18 AM UTC+8, David Shteynberg wrote: >>>> >>>> Hello again, >>>> >>>> I was able to replicate your problem on my computers. It appears that >>>> your file is corrupted in at least one place. The first location I saw >>>> the >>>> corrupted data was on line: 1644096. There may be other corrupted parts. >>>> Please see try copying your file over from the Mascot server again in >>>> case >>>> the corruption occurred during file transfer. >>>> >>>> Cheers, >>>> -David >>>> >>>> >>>> On Mon, Oct 21, 2013 at 5:18 PM, zion <mercy...@gmail.com> wrote: >>>> >>>>> Hi David: >>>>> >>>>> I post my data on : >>>>> https://docs.google.com/file/**d/0B-nLuoS-** >>>>> pq14Yl9NWFZoMnZtbmM/edit?usp=**sharing<https://docs.google.com/file/d/0B-nLuoS-pq14Yl9NWFZoMnZtbmM/edit?usp=sharing> >>>>> >>>>> Thanks a lot!! >>>>> >>>>> Peter >>>>> >>>>> >>>>> >>>>> On Tuesday, October 22, 2013 12:24:55 AM UTC+8, David Shteynberg wrote: >>>>> >>>>>> Actually the problem is this: Error: 146354 identity scores, but >>>>>> 96591 ion scores read >>>>>> >>>>>> >>>>>> Is your dat file complete? Can you post your dat file somewhere? >>>>>> >>>>>> -David >>>>>> >>>>>> >>>>>> On Mon, Oct 21, 2013 at 9:22 AM, David Shteynberg <David.Sh...@** >>>>>> systemsbiology.**org> wrote: >>>>>> >>>>>>> Hi Peter, >>>>>>> >>>>>>> >>>>>>> Can you see you if have the same error on a file that does not >>>>>>> contain '-' in it's file name? >>>>>>> >>>>>>> Thanks, >>>>>>> -David >>>>>>> >>>>>>> >>>>>>> On Mon, Oct 21, 2013 at 6:26 AM, zion <mercy...@gmail.com> wrote: >>>>>>> >>>>>>>> Dear All: >>>>>>>> >>>>>>>> I have installed TPP4.6.3, >>>>>>>> and when converting .dat to .pepxml, >>>>>>>> there is a error message like this: >>>>>>>> >>>>>>>> variable modification 1, delta mass 45.9877 for Methylthio (C): >>>>>>>> residues: C >>>>>>>> nterm: 0 >>>>>>>> cterm: 0 >>>>>>>> protterm: 0 >>>>>>>> >>>>>>>> variable modification 2, delta mass 15.9949 for Oxidation (M): >>>>>>>> residues: M >>>>>>>> nterm: 0 >>>>>>>> cterm: 0 >>>>>>>> protterm: 0 >>>>>>>> >>>>>>>> Error: 146354 identity scores, but 96591 ion scores read >>>>>>>> >>>>>>>> command "c:\Inetpub\tpp-bin\Mascot2XML >>>>>>>> c:/Inetpub/wwwroot/ISB/data/**CL**1-0.dat >>>>>>>> -Dc:/Inetpub/wwwroot/ISB/data/****SwissProt_57.8.fasta -Etrypsin" >>>>>>>> failed: Operation not permitted >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> *Command FAILED* >>>>>>>> RETURN CODE:256 >>>>>>>> >>>>>>>> CAN anyone kindly provide solutions to this problem? >>>>>>>> >>>>>>>> Thanks a lot!! >>>>>>>> >>>>>>>> Peter >>>>>>>> >>>>>>>> -- >>>>>>>> You received this message because you are subscribed to the Google >>>>>>>> Groups "spctools-discuss" group. >>>>>>>> To unsubscribe from this group and stop receiving emails from it, >>>>>>>> send an email to spctools-discu...@**googlegroups**.com. >>>>>>>> To post to this group, send email to spctools...@googlegroups.**com >>>>>>>> . >>>>>>>> >>>>>>>> Visit this group at http://groups.google.com/**group** >>>>>>>> /spctools-discuss <http://groups.google.com/group/spctools-discuss> >>>>>>>> . >>>>>>>> For more options, visit https://groups.google.com/**grou** >>>>>>>> ps/opt_out <https://groups.google.com/groups/opt_out>. >>>>>>>> >>>>>>> >>>>>>> >>>>>> -- >>>>> You received this message because you are subscribed to the Google >>>>> Groups "spctools-discuss" group. >>>>> To unsubscribe from this group and stop receiving emails from it, send >>>>> an email to spctools-discu...@**googlegroups.com. >>>>> To post to this group, send email to spctools...@googlegroups.com. >>>>> Visit this group at >>>>> http://groups.google.com/**group/spctools-discuss<http://groups.google.com/group/spctools-discuss> >>>>> . >>>>> For more options, visit >>>>> https://groups.google.com/**groups/opt_out<https://groups.google.com/groups/opt_out> >>>>> . >>>>> >>>> >>>> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to spctools-discu...@googlegroups.com <javascript:>. >> To post to this group, send email to >> spctools...@googlegroups.com<javascript:> >> . >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/groups/opt_out. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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