Hello David, Sorry, i still found the same problem when i get the correct .dat format, Could you please help test this file: https://docs.google.com/file/d/0B-nLuoS-pq14TmdIX1k5ME52anc/edit?usp=sharing
I still get the same error message: Error: 144596 identity scores, but 95523 ion scores read command "c:\Inetpub\tpp-bin\Mascot2XML c:/Inetpub/wwwroot/ISB/data/CL1-5.dat -Dc:/Inetpub/wwwroot/ISB/data/SwissProt_57.8.fasta -Etrypsin" failed: Operation not permitted *Command FAILED* RETURN CODE:256 Many thanks!! Peter On Wednesday, October 23, 2013 1:09:31 PM UTC+8, zion wrote: > > Hello David, > > The problem now is solved. > > Many thanks. > > Peter. > > On Wednesday, October 23, 2013 7:02:18 AM UTC+8, David Shteynberg wrote: >> >> Hello again, >> >> I was able to replicate your problem on my computers. It appears that >> your file is corrupted in at least one place. The first location I saw the >> corrupted data was on line: 1644096. There may be other corrupted parts. >> Please see try copying your file over from the Mascot server again in case >> the corruption occurred during file transfer. >> >> Cheers, >> -David >> >> >> On Mon, Oct 21, 2013 at 5:18 PM, zion <[email protected]> wrote: >> >>> Hi David: >>> >>> I post my data on : >>> >>> https://docs.google.com/file/d/0B-nLuoS-pq14Yl9NWFZoMnZtbmM/edit?usp=sharing >>> >>> Thanks a lot!! >>> >>> Peter >>> >>> >>> >>> On Tuesday, October 22, 2013 12:24:55 AM UTC+8, David Shteynberg wrote: >>> >>>> Actually the problem is this: Error: 146354 identity scores, but >>>> 96591 ion scores read >>>> >>>> >>>> Is your dat file complete? Can you post your dat file somewhere? >>>> >>>> -David >>>> >>>> >>>> On Mon, Oct 21, 2013 at 9:22 AM, David Shteynberg <David.Sh...@** >>>> systemsbiology.org> wrote: >>>> >>>>> Hi Peter, >>>>> >>>>> >>>>> Can you see you if have the same error on a file that does not contain >>>>> '-' in it's file name? >>>>> >>>>> Thanks, >>>>> -David >>>>> >>>>> >>>>> On Mon, Oct 21, 2013 at 6:26 AM, zion <[email protected]> wrote: >>>>> >>>>>> Dear All: >>>>>> >>>>>> I have installed TPP4.6.3, >>>>>> and when converting .dat to .pepxml, >>>>>> there is a error message like this: >>>>>> >>>>>> variable modification 1, delta mass 45.9877 for Methylthio (C): >>>>>> residues: C >>>>>> nterm: 0 >>>>>> cterm: 0 >>>>>> protterm: 0 >>>>>> >>>>>> variable modification 2, delta mass 15.9949 for Oxidation (M): >>>>>> residues: M >>>>>> nterm: 0 >>>>>> cterm: 0 >>>>>> protterm: 0 >>>>>> >>>>>> Error: 146354 identity scores, but 96591 ion scores read >>>>>> >>>>>> command "c:\Inetpub\tpp-bin\Mascot2XML >>>>>> c:/Inetpub/wwwroot/ISB/data/**CL1-0.dat >>>>>> -Dc:/Inetpub/wwwroot/ISB/data/**SwissProt_57.8.fasta -Etrypsin" failed: >>>>>> Operation not permitted >>>>>> >>>>>> >>>>>> >>>>>> *Command FAILED* >>>>>> RETURN CODE:256 >>>>>> >>>>>> CAN anyone kindly provide solutions to this problem? >>>>>> >>>>>> Thanks a lot!! >>>>>> >>>>>> Peter >>>>>> >>>>>> -- >>>>>> You received this message because you are subscribed to the Google >>>>>> Groups "spctools-discuss" group. >>>>>> To unsubscribe from this group and stop receiving emails from it, >>>>>> send an email to spctools-discu...@**googlegroups.com. >>>>>> To post to this group, send email to spctools...@googlegroups.**com. >>>>>> >>>>>> Visit this group at >>>>>> http://groups.google.com/**group/spctools-discuss<http://groups.google.com/group/spctools-discuss> >>>>>> . >>>>>> For more options, visit >>>>>> https://groups.google.com/**groups/opt_out<https://groups.google.com/groups/opt_out> >>>>>> . >>>>>> >>>>> >>>>> >>>> -- >>> You received this message because you are subscribed to the Google >>> Groups "spctools-discuss" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to [email protected]. >>> To post to this group, send email to [email protected]. >>> Visit this group at http://groups.google.com/group/spctools-discuss. >>> For more options, visit https://groups.google.com/groups/opt_out. >>> >> >> -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
