New file same problem. Line 1625847 contains corrupted data. You must check your systems/copying method/Mascot installation, etc . The problemdoes not appear to be with the TPP here or the Mascot2XML converter contained within.
Best, -David On Wed, Oct 23, 2013 at 2:30 AM, zion <[email protected]> wrote: > Hello David, > > Sorry, i still found the same problem when i get the correct .dat format, > Could you please help test this file: > > https://docs.google.com/file/d/0B-nLuoS-pq14TmdIX1k5ME52anc/edit?usp=sharing > > I still get the same error message: > > Error: 144596 identity scores, but 95523 ion scores read > > command "c:\Inetpub\tpp-bin\Mascot2XML c:/Inetpub/wwwroot/ISB/data/CL1-5.dat > -Dc:/Inetpub/wwwroot/ISB/data/SwissProt_57.8.fasta -Etrypsin" failed: > Operation not permitted > > > *Command FAILED* > > RETURN CODE:256 > Many thanks!! > > Peter > > > > On Wednesday, October 23, 2013 1:09:31 PM UTC+8, zion wrote: >> >> Hello David, >> >> The problem now is solved. >> >> Many thanks. >> >> Peter. >> >> On Wednesday, October 23, 2013 7:02:18 AM UTC+8, David Shteynberg wrote: >>> >>> Hello again, >>> >>> I was able to replicate your problem on my computers. It appears that >>> your file is corrupted in at least one place. The first location I saw the >>> corrupted data was on line: 1644096. There may be other corrupted parts. >>> Please see try copying your file over from the Mascot server again in case >>> the corruption occurred during file transfer. >>> >>> Cheers, >>> -David >>> >>> >>> On Mon, Oct 21, 2013 at 5:18 PM, zion <[email protected]> wrote: >>> >>>> Hi David: >>>> >>>> I post my data on : >>>> https://docs.google.com/file/**d/0B-nLuoS-** >>>> pq14Yl9NWFZoMnZtbmM/edit?usp=**sharing<https://docs.google.com/file/d/0B-nLuoS-pq14Yl9NWFZoMnZtbmM/edit?usp=sharing> >>>> >>>> Thanks a lot!! >>>> >>>> Peter >>>> >>>> >>>> >>>> On Tuesday, October 22, 2013 12:24:55 AM UTC+8, David Shteynberg wrote: >>>> >>>>> Actually the problem is this: Error: 146354 identity scores, but >>>>> 96591 ion scores read >>>>> >>>>> >>>>> Is your dat file complete? Can you post your dat file somewhere? >>>>> >>>>> -David >>>>> >>>>> >>>>> On Mon, Oct 21, 2013 at 9:22 AM, David Shteynberg <David.Sh...@** >>>>> systemsbiology.**org> wrote: >>>>> >>>>>> Hi Peter, >>>>>> >>>>>> >>>>>> Can you see you if have the same error on a file that does not >>>>>> contain '-' in it's file name? >>>>>> >>>>>> Thanks, >>>>>> -David >>>>>> >>>>>> >>>>>> On Mon, Oct 21, 2013 at 6:26 AM, zion <[email protected]> wrote: >>>>>> >>>>>>> Dear All: >>>>>>> >>>>>>> I have installed TPP4.6.3, >>>>>>> and when converting .dat to .pepxml, >>>>>>> there is a error message like this: >>>>>>> >>>>>>> variable modification 1, delta mass 45.9877 for Methylthio (C): >>>>>>> residues: C >>>>>>> nterm: 0 >>>>>>> cterm: 0 >>>>>>> protterm: 0 >>>>>>> >>>>>>> variable modification 2, delta mass 15.9949 for Oxidation (M): >>>>>>> residues: M >>>>>>> nterm: 0 >>>>>>> cterm: 0 >>>>>>> protterm: 0 >>>>>>> >>>>>>> Error: 146354 identity scores, but 96591 ion scores read >>>>>>> >>>>>>> command "c:\Inetpub\tpp-bin\Mascot2XML >>>>>>> c:/Inetpub/wwwroot/ISB/data/**CL**1-0.dat >>>>>>> -Dc:/Inetpub/wwwroot/ISB/data/****SwissProt_57.8.fasta -Etrypsin" >>>>>>> failed: Operation not permitted >>>>>>> >>>>>>> >>>>>>> >>>>>>> *Command FAILED* >>>>>>> RETURN CODE:256 >>>>>>> >>>>>>> CAN anyone kindly provide solutions to this problem? >>>>>>> >>>>>>> Thanks a lot!! >>>>>>> >>>>>>> Peter >>>>>>> >>>>>>> -- >>>>>>> You received this message because you are subscribed to the Google >>>>>>> Groups "spctools-discuss" group. >>>>>>> To unsubscribe from this group and stop receiving emails from it, >>>>>>> send an email to spctools-discu...@**googlegroups**.com. >>>>>>> To post to this group, send email to spctools...@googlegroups.**com. >>>>>>> >>>>>>> Visit this group at http://groups.google.com/**group** >>>>>>> /spctools-discuss <http://groups.google.com/group/spctools-discuss>. >>>>>>> For more options, visit >>>>>>> https://groups.google.com/**grou**ps/opt_out<https://groups.google.com/groups/opt_out> >>>>>>> . >>>>>>> >>>>>> >>>>>> >>>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to spctools-discu...@**googlegroups.com. >>>> To post to this group, send email to [email protected]. >>>> Visit this group at >>>> http://groups.google.com/**group/spctools-discuss<http://groups.google.com/group/spctools-discuss> >>>> . >>>> For more options, visit >>>> https://groups.google.com/**groups/opt_out<https://groups.google.com/groups/opt_out> >>>> . >>>> >>> >>> -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/groups/opt_out. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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