Gladly. On our machines were not getting an error it just simply will not generate a page. The page is completely blank. Attached are both files so you can take a look.
On Tuesday, November 29, 2016 at 4:34:50 PM UTC-5, Luis wrote: > > The new viewer has been updated to display and export protein length. It > will be included in the next release of TPP, but I'd be glad to forward you > an advance copy so that you can get to your data. > > And I have not been able to see what's wrong with the legacy viewer; I > just tested it in 3 different machines and seems to be working. Can you > share your protXML file so I can try to debug? Furthermore, if there is a > problem with the code, an error might have been logged to the web server > error log; you can explore this by opening the file httpd-error.log, > typically found under C:\TPP\log\ . Or if you don't mind sharing this > file, I can have a look. > > Cheers, > --Luis > > > On Tue, Nov 29, 2016 at 5:20 AM, Kevin Hart <[email protected] > <javascript:>> wrote: > >> Do you know how to get it to export protein length with the .tsv file >> from ProtXML? >> >> >> On Wednesday, November 23, 2016 at 3:52:08 PM UTC-5, Kevin Hart wrote: >>> >>> I can see both tables and graphical models. My files were not where TPP >>> thought they were and thus confusion arose when I clicked on models in >>> ProtXML. ProtXML just didnt know where to look. >>> >>> Legacy Viewer was nice because I was able to select different things to >>> be displayed like protein length and all of those other toggles. I cant >>> find a way in ProtXML to have it export those other things for me so I can >>> generate SAF and NSAF values. >>> >>> On Wednesday, November 23, 2016 at 1:26:24 PM UTC-5, Luis wrote: >>>> >>>> That's great. Can you only see the tables? Or also the graphical >>>> models? >>>> >>>> The legacy viewer is being phased out in favor of the new one, and is >>>> slated for removal from distribution. Is there a specific function that >>>> you need from it that the new one does not have? >>>> If you really need it soon, you could install a previous version of TPP >>>> on a different computer and open your file there. >>>> >>>> --Luis >>>> >>>> >>>> On Wed, Nov 23, 2016 at 9:10 AM, Kevin Hart <[email protected]> >>>> wrote: >>>> >>>>> I am able to gain access now to the error sensitivity tables but still >>>>> need access to legacy viewer. >>>>> >>>>> >>>>> On Monday, November 21, 2016 at 11:42:45 AM UTC-5, Kevin Hart wrote: >>>>>> >>>>>> I downloaded and am using the new version of TPP(5.0) on Windows 7 >>>>>> however im running into a small issue. I can not access the >>>>>> error/sensitivity tables through both ProtXML Viewer (Forbidden You >>>>>> don't >>>>>> have permission to access >>>>>> /tpp/data/SEL42/SEL42.Tandem.Comet.interact.prot-MODELS.html on this >>>>>> server.) and legacy viewer is not loading at all. Unfortunately I need >>>>>> these things to run all of my analysis. If anyone would have a work >>>>>> around >>>>>> or fix for this I would appreciate it. >>>>>> >>>>> -- >>>>> You received this message because you are subscribed to the Google >>>>> Groups "spctools-discuss" group. >>>>> To unsubscribe from this group and stop receiving emails from it, send >>>>> an email to [email protected]. >>>>> To post to this group, send email to [email protected]. >>>>> Visit this group at https://groups.google.com/group/spctools-discuss. >>>>> For more options, visit https://groups.google.com/d/optout. >>>>> >>>> >>>> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to [email protected] >> <javascript:>. >> Visit this group at https://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
[Wed Nov 16 13:38:10 2016] [notice] Apache/2.2.31 (Win64) configured -- resuming normal operations [Wed Nov 16 13:38:10 2016] [notice] Server built: Jul 16 2015 11:53:54 [Wed Nov 16 13:38:10 2016] [notice] Parent: Created child process 3248 [Wed Nov 16 13:38:11 2016] [notice] Child 3248: Child process is running [Wed Nov 16 13:38:11 2016] [notice] Child 3248: Acquired the start mutex. [Wed Nov 16 13:38:11 2016] [notice] Child 3248: Starting 64 worker threads. [Wed Nov 16 13:38:11 2016] [notice] Child 3248: Starting thread to listen on port 10401. [Wed Nov 16 13:38:11 2016] [notice] Child 3248: Starting thread to listen on port 10401. [Fri Nov 18 07:31:41 2016] [error] [client ::1] Premature end of script headers: tpp_gui.pl [Fri Nov 18 07:31:41 2016] [error] [client ::1] [Fri Nov 18 07:31:41 2016] tpp_gui.pl: Error: can't locate TPP installation for HomePath! [Fri Nov 18 07:42:53 2016] [warn] pid file C:/TPP/log/httpd.pid overwritten -- Unclean shutdown of previous Apache run? [Fri Nov 18 07:42:53 2016] [notice] Apache/2.2.31 (Win64) configured -- resuming normal operations [Fri Nov 18 07:42:53 2016] [notice] Server built: Jul 16 2015 11:53:54 [Fri Nov 18 07:42:53 2016] [notice] Parent: Created child process 3656 [Fri Nov 18 07:42:54 2016] [notice] Child 3656: Child process is running [Fri Nov 18 07:42:54 2016] [notice] Child 3656: Acquired the start mutex. [Fri Nov 18 07:42:54 2016] [notice] Child 3656: Starting 64 worker threads. [Fri Nov 18 07:42:54 2016] [notice] Child 3656: Starting thread to listen on port 10402. [Fri Nov 18 07:42:54 2016] [notice] Child 3656: Starting thread to listen on port 10402. [Fri Nov 18 07:44:51 2016] [error] [client ::1] Premature end of script headers: tpp_gui.pl [Fri Nov 18 07:44:51 2016] [error] [client ::1] [Fri Nov 18 07:44:51 2016] tpp_gui.pl: Error: can't locate TPP installation for HomePath! [Fri Nov 18 10:02:06 2016] [error] [client ::1] Premature end of script headers: tpp_gui.pl [Fri Nov 18 10:02:06 2016] [error] [client ::1] [Fri Nov 18 10:02:06 2016] tpp_gui.pl: Error: can't locate TPP installation for HomePath! [Fri Nov 18 10:07:11 2016] [notice] Parent: Received shutdown signal -- Shutting down the server. [Fri Nov 18 10:07:12 2016] [notice] Child 3656: Exit event signaled. Child process is ending. [Fri Nov 18 10:07:13 2016] [notice] Child 3656: Released the start mutex [Fri Nov 18 10:07:14 2016] [notice] Child 3656: All worker threads have exited. [Fri Nov 18 10:07:14 2016] [notice] Child 3656: Child process is exiting [Fri Nov 18 10:07:15 2016] [notice] Parent: Child process exited successfully. [Fri Nov 18 10:27:29 2016] [notice] Apache/2.2.31 (Win64) configured -- resuming normal operations [Fri Nov 18 10:27:29 2016] [notice] Server built: Jul 16 2015 11:53:54 [Fri Nov 18 10:27:29 2016] [notice] Parent: Created child process 2740 [Fri Nov 18 10:27:29 2016] [notice] Child 2740: Child process is running [Fri Nov 18 10:27:29 2016] [notice] Child 2740: Acquired the start mutex. [Fri Nov 18 10:27:29 2016] [notice] Child 2740: Starting 64 worker threads. [Fri Nov 18 10:27:29 2016] [notice] Child 2740: Starting thread to listen on port 10401. [Fri Nov 18 10:27:29 2016] [notice] Child 2740: Starting thread to listen on port 10401. [Fri Nov 18 12:02:03 2016] [warn] pid file C:/TPP/log/httpd.pid overwritten -- Unclean shutdown of previous Apache run? [Fri Nov 18 12:02:03 2016] [notice] Apache/2.2.31 (Win64) configured -- resuming normal operations [Fri Nov 18 12:02:03 2016] [notice] Server built: Jul 16 2015 11:53:54 [Fri Nov 18 12:02:03 2016] [notice] Parent: Created child process 2748 [Fri Nov 18 12:02:03 2016] [notice] Child 2748: Child process is running [Fri Nov 18 12:02:03 2016] [notice] Child 2748: Acquired the start mutex. [Fri Nov 18 12:02:03 2016] [notice] Child 2748: Starting 64 worker threads. [Fri Nov 18 12:02:03 2016] [notice] Child 2748: Starting thread to listen on port 10401. [Fri Nov 18 12:02:03 2016] [notice] Child 2748: Starting thread to listen on port 10401. [Fri Nov 18 14:50:52 2016] [error] [client ::1] client denied by server configuration: C:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot-MODELS.html, referer: http://localhost:10401/tpp/cgi-bin/ProtXMLViewer.pl?file=c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml [Fri Nov 18 14:50:57 2016] [error] [client ::1] client denied by server configuration: C:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot-MODELS.html, referer: http://localhost:10401/tpp/cgi-bin/ProtXMLViewer.pl?file=c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml [Fri Nov 18 14:51:03 2016] [error] [client ::1] problem (pr9): c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml is not mounted under webserver root: C:/TPP/\r, referer: http://localhost:10401/tpp/cgi-bin/tpp_gui.pl?Action=display&page=jobs&show_job=U1KUEXTWH_20161118-144717 [Fri Nov 18 14:52:04 2016] [error] [client ::1] problem: c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml is not mounted under webserver root: C:/TPP/\r [Fri Nov 18 14:52:10 2016] [error] [client ::1] problem: c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml is not mounted under webserver root: C:/TPP/\r, referer: http://localhost:10401/tpp/cgi-bin/tpp_gui.pl?Action=display&page=jobs&show_job=U1KUEXTWH_20161118-144717 [Fri Nov 18 14:52:15 2016] [error] [client ::1] problem: c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml is not mounted under webserver root: C:/TPP/\r [Fri Nov 18 14:52:24 2016] [error] [client ::1] client denied by server configuration: C:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot-MODELS.html, referer: http://localhost:10401/tpp/cgi-bin/ProtXMLViewer.pl?file=c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml [Fri Nov 18 14:52:28 2016] [error] [client ::1] client denied by server configuration: C:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot-MODELS.html, referer: http://localhost:10401/tpp/cgi-bin/ProtXMLViewer.pl?file=c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml [Fri Nov 18 14:52:44 2016] [error] [client ::1] client denied by server configuration: C:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot-MODELS.html, referer: http://localhost:10401/tpp/cgi-bin/ProtXMLViewer.pl?file=c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml [Fri Nov 18 14:53:03 2016] [error] [client ::1] problem: c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml is not mounted under webserver root: C:/TPP/\r, referer: http://localhost:10401/tpp/cgi-bin/tpp_gui.pl?Action=display&page=jobs&show_job=U1KUEXTWH_20161118-144717 [Fri Nov 18 14:53:11 2016] [error] [client ::1] problem: c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml is not mounted under webserver root: C:/TPP/\r [Fri Nov 18 14:54:04 2016] [error] [client ::1] client denied by server configuration: C:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot-MODELS.html, referer: http://localhost:10401/tpp/cgi-bin/ProtXMLViewer.pl?file=c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml [Fri Nov 18 14:55:19 2016] [error] [client ::1] client denied by server configuration: C:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot-MODELS.html, referer: http://localhost:10401/tpp/cgi-bin/ProtXMLViewer.pl?file=c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml [Fri Nov 18 14:55:29 2016] [error] [client ::1] problem: c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml is not mounted under webserver root: C:/TPP/\r, referer: http://localhost:10401/tpp/cgi-bin/tpp_gui.pl?Action=display&page=jobs&show_job=U1KUEXTWH_20161118-144717 [Fri Nov 18 14:55:32 2016] [error] [client ::1] problem: c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml is not mounted under webserver root: C:/TPP/\r [Fri Nov 18 15:10:59 2016] [error] [client ::1] problem: c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml is not mounted under webserver root: C:/TPP/\r, referer: http://localhost:10401/tpp/cgi-bin/tpp_gui.pl?Action=display&page=jobs&show_job=U1KUEXTWH_20161118-144717 [Fri Nov 18 15:11:10 2016] [error] [client ::1] client denied by server configuration: C:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot-MODELS.html, referer: http://localhost:10401/tpp/cgi-bin/ProtXMLViewer.pl?file=c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml [Fri Nov 18 15:19:29 2016] [error] [client ::1] client denied by server configuration: C:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot-MODELS.html, referer: http://localhost:10401/tpp/cgi-bin/ProtXMLViewer.pl?file=c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml [Fri Nov 18 15:20:37 2016] [error] [client ::1] problem: c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml is not mounted under webserver root: C:/TPP/\r, referer: http://localhost:10401/tpp/cgi-bin/tpp_gui.pl?Action=display&page=jobs&show_job=U1KUEXTWH_20161118-144717 [Fri Nov 18 15:20:48 2016] [error] [client ::1] problem: c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml is not mounted under webserver root: C:/TPP/\r [Mon Nov 21 13:28:11 2016] [error] [client ::1] problem (pr9): c:/Inetpub/wwwroot/ISB/data5.0/SEL43/SEL43.Tandem.Comet.interact.prot.xml is not mounted under webserver root: C:/TPP/\r, referer: http://localhost:10401/tpp/cgi-bin/tpp_gui.pl?Action=display&page=jobs&show_job=4CM4MQ45L_20161121-132610 [Mon Nov 21 13:28:57 2016] [error] [client ::1] client denied by server configuration: C:/Inetpub/wwwroot/ISB/data5.0/SEL43/SEL43.Tandem.Comet.interact.prot-MODELS.html, referer: http://localhost:10401/tpp/cgi-bin/ProtXMLViewer.pl?file=c:/Inetpub/wwwroot/ISB/data5.0/SEL43/SEL43.Tandem.Comet.interact.prot.xml [Tue Nov 22 10:10:10 2016] [error] [client ::1] client denied by server configuration: C:/Inetpub/wwwroot/ISB/data5.0/SEL46/SEL46.Comet.Tandem.interact.prot-MODELS.html, referer: http://localhost:10401/tpp/cgi-bin/ProtXMLViewer.pl?file=c:/Inetpub/wwwroot/ISB/data5.0/SEL46/SEL46.Comet.Tandem.interact.prot.xml [Tue Nov 22 10:11:54 2016] [error] [client ::1] client denied by server configuration: C:/Inetpub/wwwroot/ISB/data5.0/SEL46/SEL46.Comet.Tandem.interact.prot-MODELS.html, referer: http://localhost:10401/tpp/cgi-bin/ProtXMLViewer.pl?file=c:/Inetpub/wwwroot/ISB/data5.0/SEL46/SEL46.Comet.Tandem.interact.prot.xml [Tue Nov 22 10:12:29 2016] [error] [client ::1] problem (pr9): c:/Inetpub/wwwroot/ISB/data5.0/SEL46/SEL46.Comet.Tandem.interact.prot.xml is not mounted under webserver root: C:/TPP/\r, referer: http://localhost:10401/tpp/cgi-bin/tpp_gui.pl?Action=display&page=filebrowser [Tue Nov 22 10:23:01 2016] [error] [client ::1] client denied by server configuration: C:/Inetpub/wwwroot/ISB/data5.0/SEL41(GFP)/SEL41.Comet.Tandem.interact.prot-MODELS.html, referer: http://localhost:10401/tpp/cgi-bin/ProtXMLViewer.pl?file=c:/Inetpub/wwwroot/ISB/data5.0/SEL41(GFP)/SEL41.Comet.Tandem.interact.prot.xml [Tue Nov 22 10:37:23 2016] [error] [client ::1] client denied by server configuration: C:/Inetpub/wwwroot/ISB/data5.0/SEL46/SEL46.Comet.Tandem.interact.prot-MODELS.html, referer: http://localhost:10401/tpp/cgi-bin/ProtXMLViewer.pl?file=c:/Inetpub/wwwroot/ISB/data5.0/SEL46/SEL46.Comet.Tandem.interact.prot.xml [Tue Nov 22 11:45:21 2016] [error] [client ::1] c:/Inetpub/wwwroot/ISB/data5.0/SEL53/161115PSLSAM02249_SEL53_1.mzML(1) : error 2: Syntax error parsing XML.\r, referer: http://localhost:10401/tpp/cgi-bin/Pep3D_xml.cgi?htmFile=c:/Inetpub/wwwroot/ISB/data5.0/SEL53/161115PSLSAM02249_SEL53_1.mzML [Tue Nov 22 12:02:45 2016] [error] [client ::1] c:/Inetpub/wwwroot/ISB/data5.0/SEL53/161115PSLSAM02249_SEL53_1.mzML(1) : error 2: Syntax error parsing XML.\r, referer: http://localhost:10401/tpp/cgi-bin/Pep3D_xml.cgi?htmFile=c:/Inetpub/wwwroot/ISB/data5.0/SEL53/161115PSLSAM02249_SEL53_1.mzML [Tue Nov 22 12:11:48 2016] [error] [client ::1] client denied by server configuration: C:/Inetpub/wwwroot/ISB/data5.0/SEL54/SEL54.Comet.Tandem.interact.prot-MODELS.html, referer: http://localhost:10401/tpp/cgi-bin/ProtXMLViewer.pl?file=c:/Inetpub/wwwroot/ISB/data5.0/SEL54//SEL54.Comet.Tandem.interact.prot.xml [Tue Nov 22 14:59:14 2016] [error] [client ::1] problem (pr9): c:/Inetpub/wwwroot/ISB/data5.0/SEL55/SEL55.Comet.Tandem.interact.prot.xml is not mounted under webserver root: C:/TPP/\r, referer: http://localhost:10401/tpp/cgi-bin/tpp_gui.pl?Action=display&page=jobs&show_job=WTMXIW4TX_20161122-145845 [Wed Nov 23 11:40:43 2016] [error] [client ::1] problem: c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml is not mounted under webserver root: C:/TPP/\r, referer: http://localhost:10401/tpp/cgi-bin/tpp_gui.pl?Action=display&page=filebrowser&file_ext=*&workdir=c:/Inetpub/wwwroot/ISB/data5.0//SEL42 [Wed Nov 23 11:41:25 2016] [error] [client ::1] client denied by server configuration: C:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot-MODELS.html, referer: http://localhost:10401/tpp/cgi-bin/ProtXMLViewer.pl?file=c:/Inetpub/wwwroot/ISB/data5.0/SEL42/SEL42.Tandem.Comet.interact.prot.xml [Mon Nov 28 10:26:26 2016] [error] [client ::1] client denied by server configuration: C:/Inetpub/wwwroot/ISB/data5.0/SEL53/SEL53.Comet.Tandem.interact.prot-MODELS.html, referer: http://localhost:10401/tpp/cgi-bin/ProtXMLViewer.pl?file=c:/Inetpub/wwwroot/ISB/data5.0/SEL53/SEL53.Comet.Tandem.interact.prot.xml
SEL41.Comet.Tandem.interact.prot.xml.index
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