I reinstalled TPP 5.0 in the correct directory and legacy viewer is now
working. Thank you for working through all of this with me
On Wednesday, November 30, 2016 at 5:07:41 PM UTC-5, Luis wrote:
>
> Hi Kevin,
> Do you have 2 versions of TPP installed concurrently on the same machine?
> It looks like the installation of 5.0 was done with "C:\TPP\" specified as
> the data directory; but you are using data in the previous TPP data
> directory "C:\Inetpub\wwwroot\ISB\" .
>
>
> One quick way to get this fixed and allow you to use the legacy viewer is
> the following:
>
> 1. Open the file C:\TPP\cgi-bin\protxml2html.pl -- in Notepad or your
> favorite text editor.
>
> 2. Scroll down to around line 44, just *after *the line that says use
> tpplib_perl; # exported TPP lib function points
>
> 3. Add the following *new *line:
> *$ENV{'WEBSERVER_ROOT'} = 'C:/Inetpub/wwwroot/ISB/';*
>
> 4. Save this file.
>
> 5. Finally, if the following file exists, delete it* (please match the
> file ending carefully!!)
> C:/Inetpub/wwwroot/ISB/data5.0/SEL55/SEL55.Comet.Tandem.interact.prot.
> *xsl*
>
> * You should likewise delete any other existing .xsl files if you find any
> trouble opening its corresponding prot.xml file
>
>
> You should now be able to use the legacy viewer with any file that is located
> in this data area. Do note that this is a bit of a temporary fix, and I
> recommend that you reinstall TPP 5.0 with the correct settings at a future
> date, or when/if you update to the next version, once we release it.
>
> Hope this helps!
>
> --Luis
>
>
> On Wed, Nov 30, 2016 at 10:55 AM, Kevin Hart <[email protected]
> <javascript:>> wrote:
>
>> Gladly. On our machines were not getting an error it just simply will not
>> generate a page. The page is completely blank. Attached are both files so
>> you can take a look.
>>
>> On Tuesday, November 29, 2016 at 4:34:50 PM UTC-5, Luis wrote:
>>>
>>> The new viewer has been updated to display and export protein length.
>>> It will be included in the next release of TPP, but I'd be glad to forward
>>> you an advance copy so that you can get to your data.
>>>
>>> And I have not been able to see what's wrong with the legacy viewer; I
>>> just tested it in 3 different machines and seems to be working. Can you
>>> share your protXML file so I can try to debug? Furthermore, if there is a
>>> problem with the code, an error might have been logged to the web server
>>> error log; you can explore this by opening the file httpd-error.log,
>>> typically found under C:\TPP\log\ . Or if you don't mind sharing this
>>> file, I can have a look.
>>>
>>> Cheers,
>>> --Luis
>>>
>>>
>>> On Tue, Nov 29, 2016 at 5:20 AM, Kevin Hart <[email protected]>
>>> wrote:
>>>
>>>> Do you know how to get it to export protein length with the .tsv file
>>>> from ProtXML?
>>>>
>>>>
>>>> On Wednesday, November 23, 2016 at 3:52:08 PM UTC-5, Kevin Hart wrote:
>>>>>
>>>>> I can see both tables and graphical models. My files were not where
>>>>> TPP thought they were and thus confusion arose when I clicked on models
>>>>> in
>>>>> ProtXML. ProtXML just didnt know where to look.
>>>>>
>>>>> Legacy Viewer was nice because I was able to select different things
>>>>> to be displayed like protein length and all of those other toggles. I
>>>>> cant
>>>>> find a way in ProtXML to have it export those other things for me so I
>>>>> can
>>>>> generate SAF and NSAF values.
>>>>>
>>>>> On Wednesday, November 23, 2016 at 1:26:24 PM UTC-5, Luis wrote:
>>>>>>
>>>>>> That's great. Can you only see the tables? Or also the graphical
>>>>>> models?
>>>>>>
>>>>>> The legacy viewer is being phased out in favor of the new one, and is
>>>>>> slated for removal from distribution. Is there a specific function that
>>>>>> you need from it that the new one does not have?
>>>>>> If you really need it soon, you could install a previous version of
>>>>>> TPP on a different computer and open your file there.
>>>>>>
>>>>>> --Luis
>>>>>>
>>>>>>
>>>>>> On Wed, Nov 23, 2016 at 9:10 AM, Kevin Hart <[email protected]>
>>>>>> wrote:
>>>>>>
>>>>>>> I am able to gain access now to the error sensitivity tables but
>>>>>>> still need access to legacy viewer.
>>>>>>>
>>>>>>>
>>>>>>> On Monday, November 21, 2016 at 11:42:45 AM UTC-5, Kevin Hart wrote:
>>>>>>>>
>>>>>>>> I downloaded and am using the new version of TPP(5.0) on Windows 7
>>>>>>>> however im running into a small issue. I can not access the
>>>>>>>> error/sensitivity tables through both ProtXML Viewer (Forbidden You
>>>>>>>> don't
>>>>>>>> have permission to access
>>>>>>>> /tpp/data/SEL42/SEL42.Tandem.Comet.interact.prot-MODELS.html on this
>>>>>>>> server.) and legacy viewer is not loading at all. Unfortunately I need
>>>>>>>> these things to run all of my analysis. If anyone would have a work
>>>>>>>> around
>>>>>>>> or fix for this I would appreciate it.
>>>>>>>>
>>>>>>> --
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>>>>>>>
>>>>>>
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>>>
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>
>
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