Yes this is what I did and it worked with spectrast2tsv.py but I am wondering if there would be an other way? (an option in spectrast or something similar?). I have tested to put the ubiquitination in the modification file (spectrast.usermods) during spectrast process but I obtained the same tag (GlyGly). And is it possible to find the list of all the modifications taken into account by spectrast somewhere?
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