Thank you for your help ! Best regards, Marine. Le samedi 18 novembre 2017 04:21:22 UTC+1, Luis a écrit : > > Hello Marine, > > Unfortunately, you can only find these modifications by looking at the > source code of SpectraST, specifically, this file: (e.g. find "GlyGly") > > > https://sourceforge.net/p/sashimi/code/HEAD/tree/trunk/trans_proteomic_pipeline/src/Search/SpectraST/Peptide.cpp > > > Also, from a quick reading of the code, it seems that these built-in mods > take precedence over user-defined ones in case of a mass/name collision. > > Hope this helps, > --Luis > > > On Thu, Nov 16, 2017 at 1:39 AM, Marine <[email protected] > <javascript:>> wrote: > >> Yes this is what I did and it worked with spectrast2tsv.py but I am >> wondering if there would be an other way? (an option in spectrast or >> something similar?). I have tested to put the ubiquitination in the >> modification file (spectrast.usermods) during spectrast process but I >> obtained the same tag (GlyGly). >> And is it possible to find the list of all the modifications taken into >> account by spectrast somewhere? >> >> Thank you very much! >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to [email protected] >> <javascript:>. >> Visit this group at https://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > >
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