Hello Alastair, The TPP gui interface (which is a simple windows install) provides the command lines for the tools it runs and can be used to train yourself on commandline TPP. Also, running the PeptideProphetParser (PeptideProphet) and InterProphetParser (iProphet) on the commandline without additional flags should provide you with detailed usage statements for running the tools.
Thanks, -David On Mon, Jun 25, 2018 at 6:53 AM, alastair.skeffington via spctools-discuss < [email protected]> wrote: > I'm interested in running the TPP from the linux command line for a few > reasons (flexibility + using the computing power of our linux server, the > administers of which aren't keen on an apache webserver). > > I can get some of the individual programs and scripts to run, but I'm > struggling with some others (eg PeptideProphet and iProphet). Are there any > examples of command line uses of TPP around that I can use to guide myself? > > Many thanks, > Alastair > Max-Planck Institute for Molecular Plant Physiology > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
