Hi David, Where in the GUI would I find the command line call for each tool? Perhaps I am missing something obvious. I am in a similar situation to Alastair whom originally posted this question, and it seems he was satisfied with your reply so I figure I'm on the right track here...
Thanks, Chris On Monday, June 25, 2018 at 9:48:37 AM UTC-7, David Shteynberg wrote: > > Hello Alastair, > > The TPP gui interface (which is a simple windows install) provides the > command lines for the tools it runs and can be used to train yourself on > commandline TPP. Also, running the PeptideProphetParser (PeptideProphet) > and InterProphetParser (iProphet) on the commandline without additional > flags should provide you with detailed usage statements for running the > tools. > > Thanks, > -David > > On Mon, Jun 25, 2018 at 6:53 AM, alastair.skeffington via spctools-discuss > <[email protected] <javascript:>> wrote: > >> I'm interested in running the TPP from the linux command line for a few >> reasons (flexibility + using the computing power of our linux server, the >> administers of which aren't keen on an apache webserver). >> >> I can get some of the individual programs and scripts to run, but I'm >> struggling with some others (eg PeptideProphet and iProphet). Are there any >> examples of command line uses of TPP around that I can use to guide myself? >> >> Many thanks, >> Alastair >> Max-Planck Institute for Molecular Plant Physiology >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to [email protected] >> <javascript:>. >> Visit this group at https://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
