Hi Chris, Once you run a command, you can see the exact command line that was run on the Job Output window (after the "EXECUTING:" string). You can also view old commands, as long as their output has not been deleted.
Hope this helps, --Luis On Wed, Aug 8, 2018 at 12:48 PM, Chris Waizenegger <cbwaizeneg...@gmail.com> wrote: > Hi David, > > Where in the GUI would I find the command line call for each tool? Perhaps > I am missing something obvious. I am in a similar situation to Alastair > whom originally posted this question, and it seems he was satisfied with > your reply so I figure I'm on the right track here... > > Thanks, > > Chris > > On Monday, June 25, 2018 at 9:48:37 AM UTC-7, David Shteynberg wrote: >> >> Hello Alastair, >> >> The TPP gui interface (which is a simple windows install) provides the >> command lines for the tools it runs and can be used to train yourself on >> commandline TPP. Also, running the PeptideProphetParser (PeptideProphet) >> and InterProphetParser (iProphet) on the commandline without additional >> flags should provide you with detailed usage statements for running the >> tools. >> >> Thanks, >> -David >> >> On Mon, Jun 25, 2018 at 6:53 AM, alastair.skeffington via >> spctools-discuss <spctools...@googlegroups.com> wrote: >> >>> I'm interested in running the TPP from the linux command line for a few >>> reasons (flexibility + using the computing power of our linux server, the >>> administers of which aren't keen on an apache webserver). >>> >>> I can get some of the individual programs and scripts to run, but I'm >>> struggling with some others (eg PeptideProphet and iProphet). Are there any >>> examples of command line uses of TPP around that I can use to guide myself? >>> >>> Many thanks, >>> Alastair >>> Max-Planck Institute for Molecular Plant Physiology >>> >>> -- >>> You received this message because you are subscribed to the Google >>> Groups "spctools-discuss" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to spctools-discu...@googlegroups.com. >>> To post to this group, send email to spctools...@googlegroups.com. >>> Visit this group at https://groups.google.com/group/spctools-discuss. >>> For more options, visit https://groups.google.com/d/optout. >>> >> >> -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To post to this group, send email to spctools-discuss@googlegroups.com. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
