Good advice. Many thanks, Alastair

Am Montag, 25. Juni 2018 18:48:37 UTC+2 schrieb David Shteynberg:
>
> Hello Alastair,
>
> The TPP gui interface (which is a simple windows install) provides the 
> command lines for the tools it runs and can be used to train yourself on 
> commandline TPP.  Also, running the PeptideProphetParser (PeptideProphet) 
> and InterProphetParser (iProphet) on the commandline without additional 
> flags should provide you with detailed usage statements for running the 
> tools. 
>
> Thanks,
> -David
>
> On Mon, Jun 25, 2018 at 6:53 AM, alastair.skeffington via spctools-discuss 
> <[email protected] <javascript:>> wrote:
>
>> I'm interested in running the TPP from the linux command line for a few 
>> reasons (flexibility + using the computing power of our linux server, the 
>> administers of which aren't keen on an apache webserver).
>>
>> I can get some of the individual programs and scripts to run, but I'm 
>> struggling with some others (eg PeptideProphet and iProphet). Are there any 
>> examples of command line uses of TPP around that I can use to guide myself?
>>
>> Many thanks,
>> Alastair
>> Max-Planck Institute for Molecular Plant Physiology
>>
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