I've been focusing on HTML for several months and now I'm trying to build 
PDF (via latexpdf) from the same files. 

I have one main toctree and several hidden toctrees. 

I'm having these problems:
 1) All my contents go in one chapter, everything from all the toctrees 
ends up as Chapter 1 for some reason. 
 2) Even though I have set maxdepth to 3 in the main toc, I only see one 
level of headers in the table of contents
 3) Documents in the hidden toctrees are listed in the table of contents. 
For example, I have a set of copyright statements and such in a hidden 
toctree to prevent warnings when I build, and it shows up in the PDF 
document table of contents

Note: We haven't updated from Sphinx 1.3 yet, so if that makes a difference 
we can upgrade. 

Here's an example of how my index.rst file looks: 

.. toctree::
   :maxdepth: 3
   :name: main
   
   intro
   common_tasks
   settings
   support
   
   :ref:`genindex`
   :ref:`search`
   
   appendix_1
   appendix_2

.. toctree::
   :hidden:
   :maxdepth: 1
   :name: common_tasks_toc
   
   task_1_overview
   task_2_overview 

.. toctree::
   :hidden:
   :maxdepth: 1
   :name: settings_toc
 
   settings_topic_1
   settings_topic_2
   settings_topic_3

.. toctree::
   :hidden:
   :name: hidden files
   
   frontmatter
   doc_warnings
   license_info

Here is what I am getting in my PDF table of contents: 

CONTENTS 

1. Contents 

 1.1    About MyProduct
 1.2    Common Tasks for MyProduct
 1.3    MyProduct Settings
 1.4    Contacting Support
 1.5    Appendix 1: Something Not Very Important
 1.6    Appendix 2: Something Else Of Limited Interest
 1.7    Task 1 Overview
 1.8    Task 2 Overview
 1.9    How To Set Item1
 1.10  How To Set Item2
 1.11  How To Set Item3
 1.12  Index and Search
 1.13  Copyright Information 
 1.14  Warnings Used in This Document
 1.15  License Information

What am I doing wrong here? 

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