Ok, use the browser with different URLs and invent a new method of updating the software. (And rewrite the server-side part to provide a more orthogonal API. Think how to justify having the server or deal with installing a TeX distro on user's computer...)
I'm not using user scripts for things that they would be probably good for (like making some sites more useful without their restrictive scripts) since I haven't seen good documentation of them nor a repository of already written ones that would help me find a useful one or learn how to write them. I haven't spent enough time to know if I looked at wrong places for this.
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