I had another look at your previous email
>cmake -DCMAKE_INSTALL_PREFIX=tools -DEXTERNAL_BOOST=OFF -
"-DCMAKE_INSTALL_PREFIX=tools", huh? It seems ${prefix} is empty in
> ./build.sh --dev -DEXTERNAL_BOOST=OFF -DFFTW3_LIBRARY=/usr/local/lib/
> libfftw3.so --prefix ${prefix} tools csg
which is why build.sh uses tools as a prefix and builds csg
You can just specify the prefix directly, to be sure.
Christoph
2011/8/19 Valentina <valentina_erast...@yahoo.co.uk>:
> Yep, I am building with:
> ./build.sh --dev -DEXTERNAL_BOOST=OFF -DFFTW3_LIBRARY=/usr/local/lib/
> libfftw3.so --prefix ${prefix} tools csg
>
> But seems there is no libvotca_boost or libvotca_tools.so
> [root@xena src]# find * -name *libvotca_boost.so*
> [root@xena src]# find * -name *libvotca_tools.so*
> [root@xena src]#
>
> Thank you, V
>
> On Aug 19, 4:02 pm, Christoph Junghans <jungh...@votca.org> wrote:
>> If you build/install votca tools with -DEXTERNAL_BOOST=OFF then there
>> should be a libvotca_boost.so in the place where libvotca_tools.so is.
>>
>> Christoph
>>
>> 2011/8/19 Valentina <valentina_erast...@yahoo.co.uk>:
>>
>> > Thank you very much, it worked! till next stage (seems I am gifted for
>> > finding/creating problems)
>>
>> > cmake -DCMAKE_INSTALL_PREFIX=tools -DEXTERNAL_BOOST=OFF -
>> > DFFTW3_LIBRARY=/usr/local/lib/libfftw3.so -
>> > DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON .
>> > -- Could NOT find TXT2TAGS (missing: TXT2TAGS_EXECUTABLE)
>> > txt2tags not found, help cmake to find it by setting
>> > TXT2TAGS_EXECUTABLE
>> > -- checking for module 'libvotca_boost'
>> > -- package 'libvotca_boost' not found
>> > CMake Error at /usr/local/share/cmake-2.8/Modules/
>> > FindPackageHandleStandardArgs.cmake:91 (MESSAGE):
>> > Could NOT find VOTCA_BOOST (missing: VOTCA_BOOST_LIBRARY
>> > VOTCA_BOOST_INCLUDE_DIR)
>> > Call Stack (most recent call first):
>> > /usr/local/share/cmake-2.8/Modules/
>> > FindPackageHandleStandardArgs.cmake:252 (_FPHSA_FAILURE_MESSAGE)
>> > CMakeModules/FindVOTCA_BOOST.cmake:35
>> > (find_package_handle_standard_args)
>> > CMakeLists.txt:62 (find_package)
>>
>> > -- Configuring incomplete, errors occurred!
>>
>> > I am wondering if it is related to my votca_tools being in:
>>
>> > [root@xena src]# find / -name *votca_boost*
>> > /opt/votca/src/tools/src/libboost/libvotca_boost.pc
>> > /opt/votca/src/tools/src/libboost/libvotca_boost.pc.in
>>
>> > But then I am not too sure if I can set VOTCA_BOOST_LIBRARY and
>> > VOTCA_BOOST_INCLUDE_DIR to the above paths? What are the libraries
>> > then?
>>
>> > Many thanks!
>> > V
>>
>> > On Aug 19, 2:17 pm, Christoph Junghans <jungh...@votca.org> wrote:
>> >> I just tested Votca with fftw 3.3 and it works here.
>>
>> >> It looks strange to me that in your CMakeError.log it says:
>> >> "Determining if the function fftw_plan_r2r_1d exists in the /usr/local/
>> >> lib/libfftw3f.so failed with the following output:"
>>
>> >> 'libfftw3f.so' is the single precision version of fftw, which we do
>> >> not support, Konstantin is working on that:
>> >> <http://code.google.com/p/votca/issues/detail?id=105>
>>
>> >> Possible solutions:
>> >> -build fftw again (make sure you build the double precision version,
>> >> which is actually the default)
>> >> $make clean; ./configure --prefix=XXX --enable-shared --disable-float;
>> >> make; make install
>> >> -disable fftw support with -DWITH_FFTW=OFF, if you do so csg_boltzmann
>> >> will lose the ability to calculate autocorrelations.
>> >> -have a look at CMakeCache.txt to tweak other options related to fftw.
>>
>> >> Cheers,
>>
>> >> Christoph
>>
>> >> 2011/8/19 Valentina <valentina_erast...@yahoo.co.uk>:
>>
>> >> > Thank you:
>>
>> >> > [root@xena src]# more /opt/votca/src/tools/CMakeFiles/CMakeError.log
>> >> > Determining if the function pthread_create exists in the pthreads
>> >> > failed with the following output:
>> >> > Change Dir: /opt/votca/src/tools/CMakeFiles/CMakeTmp
>>
>> >> > Run Build Command:/usr/bin/gmake "cmTryCompileExec/fast"
>> >> > /usr/bin/gmake -f CMakeFiles/cmTryCompileExec.dir/build.make
>> >> > CMakeFiles/cmTryCompileExec.dir/build
>> >> > gmake[1]: Entering directory `/opt/votca/src/tools/CMakeFiles/
>> >> > CMakeTmp'
>> >> > /usr/local/bin/cmake -E cmake_progress_report /opt/votca/src/tools/
>> >> > CMakeFiles/CMakeTmp/CMakeFiles 1
>> >> > Building C object CMakeFiles/cmTryCompileExec.dir/
>> >> > CheckFunctionExists.c.o
>> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/
>> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/
>> >> > cmake-2.8/Modul
>> >> > es/CheckFunctionExists.c
>> >> > Linking C executable cmTryCompileExec
>> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/
>> >> > cmTryCompileExec.dir/link.txt --verbose=1
>> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/
>> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec -
>> >> > rdynamic -lpthr
>> >> > eads
>> >> > /usr/bin/ld: cannot find -lpthreads
>> >> > collect2: ld returned 1 exit status
>> >> > gmake[1]: *** [cmTryCompileExec] Error 1
>> >> > gmake[1]: Leaving directory `/opt/votca/src/tools/CMakeFiles/CMakeTmp'
>> >> > gmake: *** [cmTryCompileExec/fast] Error 2
>>
>> >> > Determining if the function fftw_plan_r2r_1d exists in the /usr/local/
>> >> > lib/libfftw3f.so failed with the following output:
>> >> > Change Dir: /opt/votca/src/tools/CMakeFiles/CMakeTmp
>>
>> >> > Run Build Command:/usr/bin/gmake "cmTryCompileExec/fast"
>> >> > /usr/bin/gmake -f CMakeFiles/cmTryCompileExec.dir/build.make
>> >> > CMakeFiles/cmTryCompileExec.dir/build
>> >> > gmake[1]: Entering directory `/opt/votca/src/tools/CMakeFiles/
>> >> > CMakeTmp'
>> >> > /usr/local/bin/cmake -E cmake_progress_report /opt/votca/src/tools/
>> >> > CMakeFiles/CMakeTmp/CMakeFiles 1
>> >> > Building C object CMakeFiles/cmTryCompileExec.dir/
>> >> > CheckFunctionExists.c.o
>> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d -o
>> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/
>> >> > local/share/cmake-2.8/Mod
>> >> > ules/CheckFunctionExists.c
>> >> > Linking C executable cmTryCompileExec
>> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/
>> >> > cmTryCompileExec.dir/link.txt --verbose=1
>> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d
>> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -o
>> >> > cmTryCompileExec -rdynamic /usr
>> >> > /local/lib/libfftw3f.so -Wl,-rpath,/usr/local/lib
>> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o: In function
>> >> > `main':
>> >> > CheckFunctionExists.c:(.text+0x15): undefined reference to
>> >> > `fftw_plan_r2r_1d'
>> >> > collect2: ld returned 1 exit status
>> >> > gmake[1]: *** [cmTryCompileExec] Error 1
>> >> > gmake[1]: Leaving directory `/opt/votca/src/tools/CMakeFiles/CMakeTmp'
>> >> > gmake: *** [cmTryCompileExec/fast] Error 2
>>
>> >> > On Aug 19, 1:47 pm, Christoph Junghans <jungh...@votca.org> wrote:
>> >> >> Hmm, I have not tested fftw 3.3, it must be super new.
>> >> >> Can you post the part of your CMakeError.log, which contains the
>> >> >> actual error message?
>>
>> >> >> Cheers,
>>
>> >> >> Christoph
>>
>> >> >> 2011/8/19 Valentina <valentina_erast...@yahoo.co.uk>:
>>
>> >> >> > Ok, the first part works:) but now I am stuck a little further
>>
>> >> >> > I have fftw3, shared, version 3.3, just freshly installed
>> >> >> > [root@xena fftw-3.3]# find /usr -name '*fftw3*.so' -print
>> >> >> > /usr/local/lib/libfftw3.so
>> >> >> > /usr/local/lib/libfftw3f.so
>> >> >> > /usr/local/lib/libfftw3f_threads.so
>>
>> >> >> > I try to compile against it (even giving a path)
>> >> >> > [root@xena src]# ./build.sh --dev -DEXTERNAL_BOOST=OFF -
>> >> >> > DFFTW3_LIBRARY=/usr/local/lib/libfftw3.so --prefix ${prefix} tools
>> >> >> > csg
>>
>> >> >> > But it seems not to like my fftw and complains:
>>
>> >> >> > cmake -DCMAKE_INSTALL_PREFIX=/opt/votca -DEXTERNAL_BOOST=OFF -
>> >> >> > DFFTW3_LIBRARY=/usr/local/lib/libfftw3.so -
>> >> >> > DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON .
>> >> >> > -- Could NOT find TXT2TAGS (missing: TXT2TAGS_EXECUTABLE)
>> >> >> > txt2tags not found, help cmake to find it by setting
>> >> >> > TXT2TAGS_EXECUTABLE
>> >> >> > -- checking for module 'fftw3'
>> >> >> > -- package 'fftw3' not found
>> >> >> > -- Found FFTW3: /usr/local/lib/libfftw3.so
>> >> >> > CMake Error at CMakeModules/FindFFTW3.cmake:43 (message):
>> >> >> > Could not find fftw_plan_r2r_1d in /usr/local/lib/libfftw3.so, take
>> >> >> > a look
>> >> >> > at the error message in /opt/votca/src/tools/CMakeFiles/
>> >> >> > CMakeError.log to
>> >> >> > find out what was going wrong. If you don't have pkg-config
>> >> >> > installed you
>> >> >> > will most likely have to set FFTW3_LIBRARY by hand (i.e.
>> >> >> > -DFFTW3_LIBRARY='/path/to/libfftw3.so') !
>> >> >> > Call Stack (most recent call first):
>> >> >> > src/libtools/CMakeLists.txt:11 (find_package)
>>
>> >> >> > -- Configuring incomplete, errors occurred!
>>
>> >> >> > Is there some trick?
>>
>> >> >> > Thank you very much for your continuous help.
>> >> >> > V
>>
>> >> >> > On Aug 18, 9:39 pm, Valentina <valentina_erast...@yahoo.co.uk> wrote:
>> >> >> >> Great, thanks!
>>
>> >> >> >> I will try it tomorrow:)
>>
>> >> >> >> V
>>
>> >> >> >> On Aug 18, 8:10 pm, Christoph Junghans <jungh...@votca.org> wrote:
>>
>> >> >> >> > Hi Valentina,
>>
>> >> >> >> > it seems you are a bug hunter ;-)
>> >> >> >> > I just found the problem in build.sh, just run ./build.sh
>> >> >> >> > --selfupdate
>>
>> >> >> >> > './build.sh --dev XXX' builds the development version
>> >> >> >> > while './build.sh XXX' builds the stable version.
>>
>> >> >> >> > Cheers,
>>
>> >> >> >> > Christoph
>>
>> >> >> >> > 2011/8/18 Valentina <valentina_erast...@yahoo.co.uk>:
>>
>> >> >> >> > > Hello again,
>>
>> >> >> >> > > I am currently trying to install VOTCA onto Centos 5.4,
>>
>> >> >> >> > > I have mercurial installed & cmake.
>>
>> >> >> >> > > When running I get the following:
>>
>> >> >> >> > > ./build.sh --prefix ${prefix} tools csg
>> >> >> >> > > This is VOTCA build.sh, version 1.7.1
>> >> >> >> > > prefix is '/opt/votca'
>> >> >> >> > > Using 5 jobs for make
>> >> >> >> > > Working on tools
>> >> >> >> > > Doing checkout for tools
>> >> >> >> > > fromhttps://tools.votca.googlecode.com/hg/
>> >> >> >> > > (CTRL-C to stop) 5 4 3 2 1
>> >> >> >> > > warning: certificate for tools.votca.googlecode.com can't be
>> >> >> >> > > verified
>> >> >> >> > > (Python too old)
>> >> >> >> > > requesting all changes
>> >> >> >> > > adding changesets
>> >> >> >> > > adding manifests
>> >> >> >> > > adding file changes
>> >> >> >> > > added 477 changesets with 2608 changes to 1678 files
>> >> >> >> > > updating to branch default
>> >> >> >> > > 1460 files updated, 0 files merged, 0 files removed, 0 files
>> >> >> >> > > unresolved
>> >> >> >> > > abort: no repository found in '/opt/votca/src' (.hg not found)!
>> >> >> >> > > No stable branch found, skipping switching!
>> >> >> >> > > We build the stable version of tools, but we are on branch
>> >> >> >> > > default and
>> >> >> >> > > not 'stable'. Please checkout the stable branch with 'hg update
>> >> >> >> > > stable' or add --dev option (disable this check with the --no-
>> >> >> >> > > branchcheck option)
>>
>> >> >> >> > > I also tried putting --no-branchcheck or --dev but it didn't
>> >> >> >> > > seem to
>> >> >> >> > > help.
>>
>> >> >> >> > > Thank
>>
>> ...
>>
>> read more »
>
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--
Dr. Christoph Junghans
Votca Core Developer
Web: http://www.votca.org
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