Thank you very much, I did get GNU gsl and it worked (till next error - posted into more relevant discussion).
Valentina On Sep 5, 8:57 am, Christoph Junghans <jungh...@votca.org> wrote: > Hi Valentina, > > the cblas thing is a bit misleading, it is only needed by libgsl, so > make sure you have GNU gsl installed. > gsl comes with its own cblas (libgslcblas), but on some distributions > gsl is linked against a different cblas, which why we are searching > for it separately. > > Can you post the end your CMakeError.log? > And the output of 'nm -D /opt/CBLAS/lib/libcblas.so' ? > > If you are not planning to use force matching you can also disable the > usage of gsl with -DWITH_GSL=OFF > > For details have a look at: > <http://code.google.com/p/votca/wiki/Dependencies> > > Cheers, > > Christoph > > 2011/9/2 Valentina <valentina_erast...@yahoo.co.uk>: > > > > > > > > > Hello again! > > > My installation on this machine is not going well:( > > > Now I am stuck with CBLAS, that i have installed as both static and > > shared and I try to compile votca now with this: > > > ./build.sh --dev -DEXTERNAL_BOOST=OFF -DFFTW3_LIBRARY=/usr/local/lib/ > > libfftw3.so -DCBLAS_LIBRARY=/opt/CBLAS/lib/libcblas.so --prefix /opt/ > > votca tools csg > > > But get an error: > > > -- Could NOT find TXT2TAGS (missing: TXT2TAGS_EXECUTABLE) > > txt2tags not found, help cmake to find it by setting > > TXT2TAGS_EXECUTABLE > > -- checking for module 'fftw3' > > -- package 'fftw3' not found > > CMake Error at CMakeModules/FindCBLAS.cmake:37 (message): > > Could not find cblas_dsyrk in /opt/CBLAS/lib/libcblas.so, take a > > look at > > the error message in /opt/votca/src/tools/CMakeFiles/CMakeError.log > > to find > > out what was going wrong. If you are using a static lib (.a) make > > sure you > > have specified all dependencies of libcblas in CBLAS_LIBRARY by hand > > (i.e. > > -DCBLAS_LIBRARY='/path/to/libcblas.so;/path/to/libm.so') ! > > Call Stack (most recent call first): > > CMakeModules/FindGSL.cmake:24 (find_package) > > src/libtools/CMakeLists.txt:25 (find_package) > > > I am lost here, as I am giving the path by hand, but votca still > > doesn't find libcblas.so > > > when I deffinetly have libcblas.so: > > find / -name '*cblas.so*' > > /opt/CBLAS/lib/libcblas.so > > > Am I missing something here? Many thanks. > > > V > > > On Aug 19, 5:09 pm, Christoph Junghans <jungh...@votca.org> wrote: > >> I had another look at your previous email>cmake > >> -DCMAKE_INSTALL_PREFIX=tools -DEXTERNAL_BOOST=OFF - > > >> "-DCMAKE_INSTALL_PREFIX=tools", huh? It seems ${prefix} is empty in> > >> ./build.sh --dev -DEXTERNAL_BOOST=OFF -DFFTW3_LIBRARY=/usr/local/lib/ > >> > libfftw3.so --prefix ${prefix} tools csg > > >> which is why build.sh uses tools as a prefix and builds csg > > >> You can just specify the prefix directly, to be sure. > > >> Christoph > > >> 2011/8/19 Valentina <valentina_erast...@yahoo.co.uk>: > > >> > Yep, I am building with: > >> > ./build.sh --dev -DEXTERNAL_BOOST=OFF -DFFTW3_LIBRARY=/usr/local/lib/ > >> > libfftw3.so --prefix ${prefix} tools csg > > >> > But seems there is no libvotca_boost or libvotca_tools.so > >> > [root@xena src]# find * -name *libvotca_boost.so* > >> > [root@xena src]# find * -name *libvotca_tools.so* > >> > [root@xena src]# > > >> > Thank you, V > > >> > On Aug 19, 4:02 pm, Christoph Junghans <jungh...@votca.org> wrote: > >> >> If you build/install votca tools with -DEXTERNAL_BOOST=OFF then there > >> >> should be a libvotca_boost.so in the place where libvotca_tools.so is. > > >> >> Christoph > > >> >> 2011/8/19 Valentina <valentina_erast...@yahoo.co.uk>: > > >> >> > Thank you very much, it worked! till next stage (seems I am gifted for > >> >> > finding/creating problems) > > >> >> > cmake -DCMAKE_INSTALL_PREFIX=tools -DEXTERNAL_BOOST=OFF - > >> >> > DFFTW3_LIBRARY=/usr/local/lib/libfftw3.so - > >> >> > DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON . > >> >> > -- Could NOT find TXT2TAGS (missing: TXT2TAGS_EXECUTABLE) > >> >> > txt2tags not found, help cmake to find it by setting > >> >> > TXT2TAGS_EXECUTABLE > >> >> > -- checking for module 'libvotca_boost' > >> >> > -- package 'libvotca_boost' not found > >> >> > CMake Error at /usr/local/share/cmake-2.8/Modules/ > >> >> > FindPackageHandleStandardArgs.cmake:91 (MESSAGE): > >> >> > Could NOT find VOTCA_BOOST (missing: VOTCA_BOOST_LIBRARY > >> >> > VOTCA_BOOST_INCLUDE_DIR) > >> >> > Call Stack (most recent call first): > >> >> > /usr/local/share/cmake-2.8/Modules/ > >> >> > FindPackageHandleStandardArgs.cmake:252 (_FPHSA_FAILURE_MESSAGE) > >> >> > CMakeModules/FindVOTCA_BOOST.cmake:35 > >> >> > (find_package_handle_standard_args) > >> >> > CMakeLists.txt:62 (find_package) > > >> >> > -- Configuring incomplete, errors occurred! > > >> >> > I am wondering if it is related to my votca_tools being in: > > >> >> > [root@xena src]# find / -name *votca_boost* > >> >> > /opt/votca/src/tools/src/libboost/libvotca_boost.pc > >> >> > /opt/votca/src/tools/src/libboost/libvotca_boost.pc.in > > >> >> > But then I am not too sure if I can set VOTCA_BOOST_LIBRARY and > >> >> > VOTCA_BOOST_INCLUDE_DIR to the above paths? What are the libraries > >> >> > then? > > >> >> > Many thanks! > >> >> > V > > >> >> > On Aug 19, 2:17 pm, Christoph Junghans <jungh...@votca.org> wrote: > >> >> >> I just tested Votca with fftw 3.3 and it works here. > > >> >> >> It looks strange to me that in your CMakeError.log it says: > >> >> >> "Determining if the function fftw_plan_r2r_1d exists in the > >> >> >> /usr/local/ > >> >> >> lib/libfftw3f.so failed with the following output:" > > >> >> >> 'libfftw3f.so' is the single precision version of fftw, which we do > >> >> >> not support, Konstantin is working on that: > >> >> >> <http://code.google.com/p/votca/issues/detail?id=105> > > >> >> >> Possible solutions: > >> >> >> -build fftw again (make sure you build the double precision version, > >> >> >> which is actually the default) > >> >> >> $make clean; ./configure --prefix=XXX --enable-shared > >> >> >> --disable-float; > >> >> >> make; make install > >> >> >> -disable fftw support with -DWITH_FFTW=OFF, if you do so > >> >> >> csg_boltzmann > >> >> >> will lose the ability to calculate autocorrelations. > >> >> >> -have a look at CMakeCache.txt to tweak other options related to > >> >> >> fftw. > > >> >> >> Cheers, > > >> >> >> Christoph > > >> >> >> 2011/8/19 Valentina <valentina_erast...@yahoo.co.uk>: > > >> >> >> > Thank you: > > >> >> >> > [root@xena src]# more > >> >> >> > /opt/votca/src/tools/CMakeFiles/CMakeError.log > >> >> >> > Determining if the function pthread_create exists in the pthreads > >> >> >> > failed with the following output: > >> >> >> > Change Dir: /opt/votca/src/tools/CMakeFiles/CMakeTmp > > >> >> >> > Run Build Command:/usr/bin/gmake "cmTryCompileExec/fast" > >> >> >> > /usr/bin/gmake -f CMakeFiles/cmTryCompileExec.dir/build.make > >> >> >> > CMakeFiles/cmTryCompileExec.dir/build > >> >> >> > gmake[1]: Entering directory `/opt/votca/src/tools/CMakeFiles/ > >> >> >> > CMakeTmp' > >> >> >> > /usr/local/bin/cmake -E cmake_progress_report /opt/votca/src/tools/ > >> >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 > >> >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ > >> >> >> > CheckFunctionExists.c.o > >> >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o > >> >> >> > CMakeFiles/ > >> >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ > >> >> >> > cmake-2.8/Modul > >> >> >> > es/CheckFunctionExists.c > >> >> >> > Linking C executable cmTryCompileExec > >> >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > >> >> >> > cmTryCompileExec.dir/link.txt --verbose=1 > >> >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create > >> >> >> > CMakeFiles/ > >> >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - > >> >> >> > rdynamic -lpthr > >> >> >> > eads > >> >> >> > /usr/bin/ld: cannot find -lpthreads > >> >> >> > collect2: ld returned 1 exit status > >> >> >> > gmake[1]: *** [cmTryCompileExec] Error 1 > >> >> >> > gmake[1]: Leaving directory > >> >> >> > `/opt/votca/src/tools/CMakeFiles/CMakeTmp' > >> >> >> > gmake: *** [cmTryCompileExec/fast] Error 2 > > >> >> >> > Determining if the function fftw_plan_r2r_1d exists in the > >> >> >> > /usr/local/ > >> >> >> > lib/libfftw3f.so failed with the following output: > >> >> >> > Change Dir: /opt/votca/src/tools/CMakeFiles/CMakeTmp > > >> >> >> > Run Build Command:/usr/bin/gmake "cmTryCompileExec/fast" > >> >> >> > /usr/bin/gmake -f CMakeFiles/cmTryCompileExec.dir/build.make > >> >> >> > CMakeFiles/cmTryCompileExec.dir/build > >> >> >> > gmake[1]: Entering directory `/opt/votca/src/tools/CMakeFiles/ > >> >> >> > CMakeTmp' > >> >> >> > /usr/local/bin/cmake -E cmake_progress_report /opt/votca/src/tools/ > >> >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 > >> >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ > >> >> >> > CheckFunctionExists.c.o > >> >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d -o > >> >> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/ > >> >> >> > local/share/cmake-2.8/Mod > >> >> >> > ules/CheckFunctionExists.c > >> >> >> > Linking C executable cmTryCompileExec > >> >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > >> >> >> > cmTryCompileExec.dir/link.txt --verbose=1 > >> >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d > >> >> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -o > >> >> >> > cmTryCompileExec -rdynamic /usr > >> >> >> > /local/lib/libfftw3f.so -Wl,-rpath,/usr/local/lib > >> >> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o: In > >> >> >> > function > >> >> >> > `main': > >> >> >> > CheckFunctionExists.c:(.text+0x15): undefined reference to > >> >> >> > `fftw_plan_r2r_1d' > >> >> >> > collect2: ld returned 1 exit status > >> >> >> > gmake[1]: *** [cmTryCompileExec] Error 1 > >> >> >> > gmake[1]: Leaving directory > >> >> >> > `/opt/votca/src/tools/CMakeFiles/CMakeTmp' > >> >> >> > gmake: *** [cmTryCompileExec/fast] Error 2 > > >> >> >> > On Aug 19, 1:47 pm, Christoph Junghans <jungh...@votca.org> wrote: > >> >> >> >> Hmm, I have not tested fftw 3.3, it must be super new. > >> >> >> >> Can you post the part of your CMakeError.log, which contains the > >> >> >> >> actual error message? > > >> >> >> >> Cheers, > > >> >> >> >> Christoph > > >> >> >> >> 2011/8/19 Valentina <valentina_erast...@yahoo.co.uk>: > > >> >> >> >> > Ok, the first part works:) but now I am stuck a little further > > >> >> >> >> > I have fftw3,... > > read more » -- You received this message because you are subscribed to the Google Groups "votca" group. 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