When I had to solve the netherland problem months ago, I did a quick look 
around and understood that the NASA was using a shapefile approach (thus, 
vectorial)  to integrate the water problem in SRTM. It is called SWBD , 
thought to be used with SRTM.
Water shapes are available already in the ESRI data sets you are using in 
XCM topology. Only, XCsoar is not using them (1) and (2) they are 
incomplete.

But since you say you have raster data of water coverage, which I could not 
find as usable months ago, then your problem is already solved.
Either use non-lossy DEM compression or use a separated DEM file as you 
said.

The alternative solution is to create zoom leveled layers for topology - and 
thus also for coast lines to reduce items to be painted at lower zoom 
levels.
This is precisely how commercial maps are working by the way, and it is easy 
to accomplish (just takes space on disk).

Sorry to bother you .
paolo

 
 
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