Sorry if this is an insulting question, but did you store it in enough glycerol 
to prevent it from freezing?  Proteins don't like freeze/thaw cycles, 
especially slow ones.

________________________________
From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of jai mohan 
[00000cab66323371-dmarc-requ...@jiscmail.ac.uk]
Sent: Tuesday, June 27, 2017 7:22 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] Separating Monomers and Dimers

Dear all,
I am working on a Red Fluorescent Protein (His-Tag) molecular weight around 
27kDa. After purification I ran a SDS page, the band at 27kDa confirms the 
monomer. The protein was stored at -20C, a week later again I ran a gel, this 
time I saw another new band between 50-60kDa, it confirms the protein solution 
contains both monomers and dimers. I would like to know, what is the best way 
to separate the monomers and dimers? One of my colleague advice me to go for 
sucrose gradient centrifugation and size exclusion chromatography.
However, I seek all your valuable suggestions and advice.

With best regards
Dr. S.M.Jaimohan

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