I'd be happy to do. Please see attached file. Thanks
On 22 August 2017 at 21:32, Scott Kostyshak <skost...@lyx.org> wrote: > On Tue, Aug 22, 2017 at 03:56:24PM -0400, John Kane wrote: > > Just as a minor follow-up the knitr.module is in usr/share/lux/layouts. > So > > I have knitr installed in R and the knitr.module in LyX. > > > > Presumably I'm missing something obvious but what? > > Can you send your configure log? That's always useful for issues like > these. > > Scott > -- John Kane Kingston ON Canada
INFO: checking for a Latex2e program... INFO: +checking for "latex"... yes INFO: checking for a DVI postprocessing program... INFO: +checking for "pplatex"... no INFO: checking for pLaTeX, the Japanese LaTeX... INFO: +checking for "platex"... yes DEBUG: Add to RC: \converter platex dvi "platex" "latex=platex" DEBUG: Add to RC: \converter latex dvi "latex" "latex" INFO: checking for a java interpreter... INFO: +checking for "java"... yes INFO: checking for a perl interpreter... INFO: +checking for "perl"... yes INFO: checking for a Tgif viewer and editor... INFO: +checking for "tgif"... no DEBUG: Add to RC: \Format tgif "obj, tgo" Tgif "" "auto" "auto" "vector" "application/x-tgif" INFO: checking for a FIG viewer and editor... INFO: +checking for "xfig"... no INFO: +checking for "jfig3-itext.jar"... no INFO: +checking for "jfig3.jar"... no DEBUG: Add to RC: \Format fig fig FIG "" "auto" "auto" "vector" "application/x-xfig" INFO: checking for a Dia viewer and editor... INFO: +checking for "dia"... no DEBUG: Add to RC: \Format dia dia DIA "" "auto" "auto" "vector,zipped=native", "application/x-dia-diagram" INFO: checking for an OpenDocument drawing viewer and editor... INFO: +checking for "libreoffice"... yes DEBUG: Add to RC: \Format odg "odg, sxd" "OpenDocument drawing" "" "libreoffice" "libreoffice" "vector,zipped=native" "application/vnd.oasis.opendocument.graphics" DEBUG: Add to RC: \editor_alternatives odg "libreoffice" \viewer_alternatives odg "libreoffice" INFO: +checking for "lodraw"... yes DEBUG: Add to RC: \editor_alternatives odg "lodraw" \viewer_alternatives odg "lodraw" INFO: +checking for "ooffice"... no INFO: +checking for "oodraw"... no INFO: +checking for "soffice"... yes DEBUG: Add to RC: \editor_alternatives odg "soffice" \viewer_alternatives odg "soffice" INFO: checking for a Grace viewer and editor... INFO: +checking for "xmgrace"... no DEBUG: Add to RC: \Format agr agr Grace "" "auto" "auto" "vector" "" INFO: checking for a FEN viewer and editor... INFO: +checking for "xboard"... no DEBUG: Add to RC: \Format fen fen FEN "" "auto" "auto" "" "" INFO: checking for a SVG viewer and editor... INFO: +checking for "inkscape"... no DEBUG: Add to RC: \Format svg "svg" SVG "" "auto" "auto" "vector" "image/svg+xml" \Format svgz "svgz" "SVG (compressed)" "" "auto" "auto" "vector,zipped=native" "" INFO: checking for a raster image viewer... INFO: +checking for "xv"... no INFO: +checking for "kview"... no INFO: +checking for "gimp-remote"... no INFO: +checking for "gimp"... no INFO: checking for a raster image editor... INFO: +checking for "gimp-remote"... no INFO: +checking for "gimp"... no DEBUG: Add to RC: \Format bmp bmp BMP "" "auto" "auto" "" "image/x-bmp" \Format gif gif GIF "" "auto" "auto" "" "image/gif" \Format jpg "jpg, jpeg" JPEG "" "auto" "auto" "" "image/jpeg" \Format pbm pbm PBM "" "auto" "auto" "" "image/x-portable-bitmap" \Format pgm pgm PGM "" "auto" "auto" "" "image/x-portable-graymap" \Format png png PNG "" "auto" "auto" "" "image/x-png" \Format ppm ppm PPM "" "auto" "auto" "" "image/x-portable-pixmap" \Format tiff tif TIFF "" "auto" "auto" "" "image/tiff" \Format xbm xbm XBM "" "auto" "auto" "" "image/x-xbitmap" \Format xpm xpm XPM "" "auto" "auto" "" "image/x-xpixmap" INFO: checking for a text editor... INFO: +checking for "xemacs"... no INFO: +checking for "gvim"... no INFO: +checking for "kedit"... no INFO: +checking for "kwrite"... no INFO: +checking for "kate"... no INFO: +checking for "nedit"... no INFO: +checking for "gedit"... yes DEBUG: Add to RC: \Format asciichess asc "Plain text (chess output)" "" "" "gedit" "" "" \Format asciiimage asc "Plain text (image)" "" "" "gedit" "" "" \Format asciixfig asc "Plain text (Xfig output)" "" "" "gedit" "" "" \Format dateout tmp "date (output)" "" "" "gedit" "" "" \Format docbook sgml DocBook B "" "gedit" "document,menu=export" "" \Format docbook-xml xml "DocBook (XML)" "" "" "gedit" "document,menu=export" "application/docbook+xml" \Format dot dot "Graphviz Dot" "" "" "gedit" "vector" "text/vnd.graphviz" \Format dviluatex tex "LaTeX (dviluatex)" "" "" "gedit" "document,menu=export" "" \Format platex tex "LaTeX (pLaTeX)" "" "" "gedit" "document,menu=export" "" \Format literate nw NoWeb N "" "gedit" "document,menu=export" "" \Format sweave Rnw "Sweave" S "" "gedit" "document,menu=export" "" \Format r R "R/S code" "" "" "gedit" "document,menu=export" "" \Format knitr Rnw "Rnw (knitr)" "" "" "gedit" "document,menu=export" "" \Format lilypond ly "LilyPond music" "" "" "gedit" "vector" "text/x-lilypond" \Format lilypond-book lytex "LilyPond book (LaTeX)" "" "" "gedit" "document,menu=export" "" \Format latex tex "LaTeX (plain)" L "" "gedit" "document,menu=export" "text/x-tex" \Format luatex tex "LaTeX (LuaTeX)" "" "" "gedit" "document,menu=export" "" \Format pdflatex tex "LaTeX (pdflatex)" "" "" "gedit" "document,menu=export" "" \Format xetex tex "LaTeX (XeTeX)" "" "" "gedit" "document,menu=export" "" \Format latexclipboard tex "LaTeX (clipboard)" "" "" "gedit" "" "" \Format text txt "Plain text" a "" "gedit" "document,menu=export" "text/plain" \Format text2 txt "Plain text (pstotext)" "" "" "gedit" "document" "" \Format text3 txt "Plain text (ps2ascii)" "" "" "gedit" "document" "" \Format text4 txt "Plain text (catdvi)" "" "" "gedit" "document" "" \Format textparagraph txt "Plain Text, Join Lines" "" "" "gedit" "document" "" \Format beamer.info pdf.info "Info (Beamer)" "" "" "gedit" "document,menu=export" "" DEBUG: Add to RC: \editor_alternatives asciichess "gedit" \viewer_alternatives asciichess "gedit" \editor_alternatives asciiimage "gedit" \viewer_alternatives asciiimage "gedit" \editor_alternatives asciixfig "gedit" \viewer_alternatives asciixfig "gedit" \editor_alternatives dateout "gedit" \viewer_alternatives dateout "gedit" \editor_alternatives docbook "gedit" \viewer_alternatives docbook "gedit" \editor_alternatives docbook-xml "gedit" \viewer_alternatives docbook-xml "gedit" \editor_alternatives dot "gedit" \viewer_alternatives dot "gedit" \editor_alternatives dviluatex "gedit" \viewer_alternatives dviluatex "gedit" \editor_alternatives platex "gedit" \viewer_alternatives platex "gedit" \editor_alternatives literate "gedit" \viewer_alternatives literate "gedit" \editor_alternatives sweave "gedit" \viewer_alternatives sweave "gedit" \editor_alternatives r "gedit" \viewer_alternatives r "gedit" \editor_alternatives knitr "gedit" \viewer_alternatives knitr "gedit" \editor_alternatives lilypond "gedit" \viewer_alternatives lilypond "gedit" \editor_alternatives lilypond-book "gedit" \viewer_alternatives lilypond-book "gedit" \editor_alternatives latex "gedit" \viewer_alternatives latex "gedit" \editor_alternatives luatex "gedit" \viewer_alternatives luatex "gedit" \editor_alternatives pdflatex "gedit" \viewer_alternatives pdflatex "gedit" \editor_alternatives xetex "gedit" \viewer_alternatives xetex "gedit" \editor_alternatives latexclipboard "gedit" \viewer_alternatives latexclipboard "gedit" \editor_alternatives text "gedit" \viewer_alternatives text "gedit" \editor_alternatives text2 "gedit" \viewer_alternatives text2 "gedit" \editor_alternatives text3 "gedit" \viewer_alternatives text3 "gedit" \editor_alternatives text4 "gedit" \viewer_alternatives text4 "gedit" \editor_alternatives textparagraph "gedit" \viewer_alternatives textparagraph "gedit" \editor_alternatives beamer.info "gedit" \viewer_alternatives beamer.info "gedit" INFO: +checking for "notepad"... no INFO: +checking for "geany"... no INFO: +checking for "leafpad"... no INFO: +checking for "mousepad"... no INFO: checking for gnumeric spreadsheet software... INFO: +checking for "gnumeric"... yes DEBUG: Add to RC: \Format gnumeric gnumeric "Gnumeric spreadsheet" "" "" "gnumeric" "document" "application/x-gnumeric" \Format excel xls "Excel spreadsheet" "" "" "gnumeric" "document" "application/vnd.ms-excel" \Format excel2 xlsx "MS Excel Office Open XML" "" "" "gnumeric" "document" "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet" \Format html_table html "HTML Table (for spreadsheets)" "" "" "gnumeric" "document" "text/html" \Format oocalc ods "OpenDocument spreadsheet" "" "" "gnumeric" "document" "application/vnd.oasis.opendocument.spreadsheet" DEBUG: Add to RC: \viewer_alternatives gnumeric "gnumeric" \viewer_alternatives excel "gnumeric" \viewer_alternatives excel2 "gnumeric" \viewer_alternatives html_table "gnumeric" \viewer_alternatives oocalc "gnumeric" INFO: checking for an HTML previewer... INFO: +checking for "firefox"... yes DEBUG: Add to RC: \Format xhtml xhtml "LyXHTML" y "firefox" "" "document,menu=export" "application/xhtml+xml" DEBUG: Add to RC: \viewer_alternatives xhtml "firefox" INFO: +checking for "mozilla"... no INFO: +checking for "netscape"... no INFO: checking for a BibTeX editor... INFO: +checking for "jabref"... yes DEBUG: Add to RC: \Format bibtex bib "BibTeX" "" "" "jabref" "" "text/x-bibtex" DEBUG: Add to RC: \editor_alternatives bibtex "jabref" INFO: +checking for "JabRef"... no INFO: +checking for "pybliographic"... no INFO: +checking for "bibdesk"... no INFO: +checking for "gbib"... no INFO: +checking for "kbib"... no INFO: +checking for "kbibtex"... no INFO: +checking for "sixpack"... no INFO: +checking for "bibedit"... no INFO: +checking for "tkbibtexxemacs"... no INFO: +checking for "gvim"... no INFO: +checking for "kedit"... no INFO: +checking for "kwrite"... no INFO: +checking for "kate"... no INFO: +checking for "jedit"... no INFO: +checking for "TeXnicCenter"... no INFO: +checking for "WinEdt"... no INFO: +checking for "WinShell"... no INFO: +checking for "PSPad"... no INFO: +checking for "nedit"... no INFO: +checking for "gedit"... yes DEBUG: Add to RC: \editor_alternatives bibtex "gedit" INFO: +checking for "notepad"... no INFO: +checking for "geany"... no INFO: +checking for "leafpad"... no INFO: +checking for "mousepad"... no INFO: checking for a Postscript previewer... INFO: +checking for "kghostview"... no INFO: +checking for "okular"... yes DEBUG: Add to RC: \Format eps eps EPS "" "okular" "" "vector" "image/x-eps" \Format eps2 eps "EPS (uncropped)" "" "okular" "" "vector" "" \Format eps3 eps "EPS (cropped)" "" "okular" "" "document" "" \Format ps ps Postscript t "okular" "" "document,vector,menu=export" "application/postscript" DEBUG: Add to RC: \viewer_alternatives eps "okular" \viewer_alternatives eps2 "okular" \viewer_alternatives eps3 "okular" \viewer_alternatives ps "okular" INFO: +checking for "qpdfview"... no INFO: +checking for "evince"... yes DEBUG: Add to RC: \viewer_alternatives eps "evince" \viewer_alternatives eps2 "evince" \viewer_alternatives eps3 "evince" \viewer_alternatives ps "evince" INFO: +checking for "gv"... no INFO: +checking for "ghostview"... no INFO: +checking for "gsview64"... no INFO: +checking for "gsview32"... no INFO: checking for a PDF previewer... INFO: +checking for "pdfview"... no INFO: +checking for "kpdf"... no INFO: +checking for "okular"... yes DEBUG: Add to RC: \Format pdf pdf "PDF (ps2pdf)" P "okular" "" "document,vector,menu=export" "" \Format pdf2 pdf "PDF (pdflatex)" F "okular" "" "document,vector,menu=export" "" \Format pdf3 pdf "PDF (dvipdfm)" m "okular" "" "document,vector,menu=export" "" \Format pdf4 pdf "PDF (XeTeX)" X "okular" "" "document,vector,menu=export" "" \Format pdf5 pdf "PDF (LuaTeX)" u "okular" "" "document,vector,menu=export" "" \Format pdf6 pdf "PDF (graphics)" "" "okular" "" "vector" "application/pdf" \Format pdf7 pdf "PDF (cropped)" "" "okular" "" "document,vector" "" \Format pdf8 pdf "PDF (lower resolution)" "" "okular" "" "document,vector" "" DEBUG: Add to RC: \viewer_alternatives pdf "okular" \viewer_alternatives pdf2 "okular" \viewer_alternatives pdf3 "okular" \viewer_alternatives pdf4 "okular" \viewer_alternatives pdf5 "okular" \viewer_alternatives pdf6 "okular" \viewer_alternatives pdf7 "okular" \viewer_alternatives pdf8 "okular" INFO: +checking for "qpdfview"... no INFO: +checking for "evince"... yes DEBUG: Add to RC: \viewer_alternatives pdf "evince" \viewer_alternatives pdf2 "evince" \viewer_alternatives pdf3 "evince" \viewer_alternatives pdf4 "evince" \viewer_alternatives pdf5 "evince" \viewer_alternatives pdf6 "evince" \viewer_alternatives pdf7 "evince" \viewer_alternatives pdf8 "evince" INFO: +checking for "kghostview"... no INFO: +checking for "xpdf"... no INFO: +checking for "SumatraPDF"... no INFO: +checking for "acrobat"... no INFO: +checking for "acroread"... no INFO: +checking for "mupdf"... no INFO: +checking for "gv"... no INFO: +checking for "ghostview"... no INFO: +checking for "AcroRd32"... no INFO: +checking for "gsview64"... no INFO: +checking for "gsview32"... no INFO: checking for a DVI previewer... INFO: +checking for "xdvi"... yes DEBUG: Add to RC: \Format dvi dvi DVI D "xdvi" "" "document,vector,menu=export" "application/x-dvi" \Format dvi3 dvi "DVI (LuaTeX)" V "xdvi" "" "document,vector,menu=export" "" DEBUG: Add to RC: \viewer_alternatives dvi "xdvi" \viewer_alternatives dvi3 "xdvi" INFO: +checking for "kdvi"... no INFO: +checking for "okular"... yes DEBUG: Add to RC: \viewer_alternatives dvi "okular" \viewer_alternatives dvi3 "okular" INFO: +checking for "yap"... no INFO: +checking for "dviout"... no INFO: checking for an HTML previewer... INFO: +checking for "firefox"... yes DEBUG: Add to RC: \Format html "html, htm" HTML H "firefox" "" "document,menu=export" "text/html" DEBUG: Add to RC: \viewer_alternatives html "firefox" INFO: +checking for "mozilla"... no INFO: +checking for "netscape"... no INFO: checking for Noteedit... INFO: +checking for "noteedit"... no DEBUG: Add to RC: \Format noteedit not Noteedit "" "auto" "auto" "vector" "" INFO: checking for an OpenDocument viewer... INFO: +checking for "libreoffice"... yes DEBUG: Add to RC: \Format odt odt "OpenDocument (tex4ht)" "" "libreoffice" "libreoffice" "document,vector,menu=export" "application/vnd.oasis.opendocument.text" \Format odt2 odt "OpenDocument (eLyXer)" "" "libreoffice" "libreoffice" "document,vector,menu=export" "application/vnd.oasis.opendocument.text" \Format odt3 odt "OpenDocument (Pandoc)" "" "libreoffice" "libreoffice" "document,vector,menu=export" "application/vnd.oasis.opendocument.text" \Format sxw sxw "OpenOffice.Org (sxw)" "" "" "" "document,vector" "application/vnd.sun.xml.writer" DEBUG: Add to RC: \editor_alternatives odt "libreoffice" \viewer_alternatives odt "libreoffice" \editor_alternatives odt2 "libreoffice" \viewer_alternatives odt2 "libreoffice" \editor_alternatives odt3 "libreoffice" \viewer_alternatives odt3 "libreoffice" \editor_alternatives sxw "libreoffice" \viewer_alternatives sxw "libreoffice" INFO: +checking for "lwriter"... no INFO: +checking for "lowriter"... yes DEBUG: Add to RC: \editor_alternatives odt "lowriter" \viewer_alternatives odt "lowriter" \editor_alternatives odt2 "lowriter" \viewer_alternatives odt2 "lowriter" \editor_alternatives odt3 "lowriter" \viewer_alternatives odt3 "lowriter" \editor_alternatives sxw "lowriter" \viewer_alternatives sxw "lowriter" INFO: +checking for "oowriter"... no INFO: +checking for "swriter"... no INFO: +checking for "abiword"... no INFO: checking for a Rich Text and Word viewer... INFO: +checking for "libreoffice"... yes DEBUG: Add to RC: \Format rtf rtf "Rich Text Format" "" "libreoffice" "libreoffice" "document,vector,menu=export" "application/rtf" \Format word doc "MS Word" W "libreoffice" "libreoffice" "document,vector,menu=export" "application/msword" \Format word2 docx "MS Word Office Open XML" O "libreoffice" "libreoffice" "document,vector,menu=export" "application/vnd.openxmlformats-officedocument.wordprocessingml.document" DEBUG: Add to RC: \editor_alternatives rtf "libreoffice" \viewer_alternatives rtf "libreoffice" \editor_alternatives word "libreoffice" \viewer_alternatives word "libreoffice" \editor_alternatives word2 "libreoffice" \viewer_alternatives word2 "libreoffice" INFO: +checking for "lwriter"... no INFO: +checking for "lowriter"... yes DEBUG: Add to RC: \editor_alternatives rtf "lowriter" \viewer_alternatives rtf "lowriter" \editor_alternatives word "lowriter" \viewer_alternatives word "lowriter" \editor_alternatives word2 "lowriter" \viewer_alternatives word2 "lowriter" INFO: +checking for "oowriter"... no INFO: +checking for "swriter"... no INFO: +checking for "abiword"... no DEBUG: Add to RC: \Format date "" "date command" "" "" "" "" "" \Format csv csv "Table (CSV)" "" "" "" "document" "text/csv" \Format fax "" Fax "" "" "" "document" "" \Format lyx lyx LyX "" "" "" "" "application/x-lyx" \Format lyx13x 13.lyx "LyX 1.3.x" "" "" "" "document" "" \Format lyx14x 14.lyx "LyX 1.4.x" "" "" "" "document" "" \Format lyx15x 15.lyx "LyX 1.5.x" "" "" "" "document" "" \Format lyx16x 16.lyx "LyX 1.6.x" "" "" "" "document" "" \Format lyx20x 20.lyx "LyX 2.0.x" "" "" "" "document" "" \Format lyx21x 21.lyx "LyX 2.1.x" "" "" "" "document,menu=export" "" \Format clyx cjklyx "CJK LyX 1.4.x (big5)" "" "" "" "document" "" \Format jlyx cjklyx "CJK LyX 1.4.x (euc-jp)" "" "" "" "document" "" \Format klyx cjklyx "CJK LyX 1.4.x (euc-kr)" "" "" "" "document" "" \Format lyxpreview lyxpreview "LyX Preview" "" "" "" "" "" \Format pdftex pdftex_t PDFTEX "" "" "" "" "" \Format program "" Program "" "" "" "" "" \Format pstex pstex_t PSTEX "" "" "" "" "" \Format wmf wmf "Windows Metafile" "" "" "" "vector" "image/x-wmf" \Format emf emf "Enhanced Metafile" "" "" "" "vector" "image/x-emf" \Format wordhtml "html, htm" "HTML (MS Word)" "" "" "" "document" "" INFO: checking for the pdflatex program... INFO: +checking for "pdflatex"... yes DEBUG: Add to RC: \converter pdflatex pdf2 "pdflatex $$i" "latex=pdflatex" INFO: checking for XeTeX... INFO: +checking for "xelatex"... yes DEBUG: Add to RC: \converter xetex pdf4 "xelatex $$i" "latex=xelatex" INFO: checking for LuaTeX... INFO: +checking for "lualatex"... yes INFO: checking for LuaTeX (DVI)... INFO: +checking for "dvilualatex"... yes DEBUG: Add to RC: \converter luatex pdf5 "lualatex" "latex=lualatex" DEBUG: Add to RC: \converter luatex dvi3 "dvilualatex" "latex=dvilualatex" INFO: checking for a LaTeX/Noweb -> LyX converter... INFO: +checking for "/home/jrkrideau/tex2lyx/tex2lyx"... no INFO: +checking for "/home/jrkrideau/tex2lyx/tex2lyx"... no INFO: +checking for "/home/jrkrideau/tex2lyx"... no INFO: +checking for "/home/jrkrideau/tex2lyx"... no INFO: +checking for "tex2lyx"... yes DEBUG: Add to RC: \converter latex lyx "tex2lyx -f $$i $$o" "" \converter latexclipboard lyx "tex2lyx -fixedenc utf8 -f $$i $$o" "" \converter literate lyx "tex2lyx -n -m noweb -f $$i $$o" "" \converter sweave lyx "tex2lyx -n -m sweave -f $$i $$o" "" \converter knitr lyx "tex2lyx -n -m knitr -f $$i $$o" "" INFO: checking for a Noweb -> LaTeX converter... INFO: +checking for "noweave"... no DEBUG: Add to RC: \converter literate latex "" "" \converter literate pdflatex "" "" \converter literate xetex "" "" \converter literate luatex "" "" INFO: checking for a Sweave -> LaTeX converter... INFO: +checking for "Rscript"... yes DEBUG: Add to RC: \converter sweave latex "Rscript --verbose --no-save --no-restore $$s/scripts/lyxsweave.R $$p$$i $$p$$o $$e $$r" "" \converter sweave pdflatex "Rscript --verbose --no-save --no-restore $$s/scripts/lyxsweave.R $$p$$i $$p$$o $$e $$r" "" \converter sweave xetex "Rscript --verbose --no-save --no-restore $$s/scripts/lyxsweave.R $$p$$i $$p$$o $$e $$r" "" \converter sweave luatex "Rscript --verbose --no-save --no-restore $$s/scripts/lyxsweave.R $$p$$i $$p$$o $$e $$r" "" INFO: checking for a knitr -> LaTeX converter... INFO: +checking for "Rscript"... yes DEBUG: Add to RC: \converter knitr latex "Rscript --verbose --no-save --no-restore $$s/scripts/lyxknitr.R $$p$$i $$p$$o $$e $$r" "" \converter knitr pdflatex "Rscript --verbose --no-save --no-restore $$s/scripts/lyxknitr.R $$p$$i $$p$$o $$e $$r" "" \converter knitr xetex "Rscript --verbose --no-save --no-restore $$s/scripts/lyxknitr.R $$p$$i $$p$$o $$e $$r" "" \converter knitr luatex "Rscript --verbose --no-save --no-restore $$s/scripts/lyxknitr.R $$p$$i $$p$$o $$e $$r" "" INFO: checking for a Sweave -> R/S code converter... INFO: +checking for "Rscript"... yes DEBUG: Add to RC: \converter sweave r "Rscript --verbose --no-save --no-restore $$s/scripts/lyxstangle.R $$i $$e $$r" "" INFO: checking for a knitr -> R/S code converter... INFO: +checking for "Rscript"... yes DEBUG: Add to RC: \converter knitr r "Rscript --verbose --no-save --no-restore $$s/scripts/lyxknitr.R $$p$$i $$p$$o $$e $$r tangle" "" INFO: checking for an HTML -> LaTeX converter... INFO: +checking for "html2latex"... no INFO: +checking for "gnuhtml2latex"... no INFO: +checking for "htmltolatex"... no INFO: +checking for "htmltolatex.jar"... no INFO: checking for an MS Word -> LaTeX converter... INFO: +checking for "wvCleanLatex"... no DEBUG: Add to RC: \converter word latex "" "" INFO: checking for a LyX -> HTML converter... INFO: +checking for "elyxer.py"... no INFO: +checking for "elyxer"... no DEBUG: Add to RC: \converter lyx html "" "" INFO: checking for a LyX -> HTML (MS Word) converter... INFO: +checking for "elyxer.py"... no INFO: +checking for "elyxer"... no DEBUG: Add to RC: \converter lyx wordhtml "" "" INFO: checking for a LyX -> OpenDocument (eLyXer) converter... INFO: +checking for "elyxer.py"... no INFO: +checking for "elyxer"... no DEBUG: Add to RC: \converter lyx odt2 "" "" INFO: checking for a LyX -> Word converter... INFO: +checking for "elyxer.py"... no INFO: +checking for "elyxer"... no DEBUG: Add to RC: \converter lyx word "" "" INFO: checking for a LaTeX -> HTML converter... INFO: +checking for "htlatex"... yes DEBUG: Add to RC: \converter latex html "htlatex $$i" "needaux" DEBUG: Add to RC: \copier html "python -tt $$s/scripts/ext_copy.py -e html,png,css $$i $$o" INFO: checking for a LaTeX -> HTML (MS Word) converter... INFO: +checking for "htlatex"... yes DEBUG: Add to RC: \converter latex wordhtml "htlatex $$i 'html,word' 'symbol/!' '-cvalidate'" "needaux" DEBUG: Add to RC: \copier wordhtml "python -tt $$s/scripts/ext_copy.py -e html,png,css $$i $$o" INFO: checking for "lyxblogger module"... no INFO: checking for an OpenOffice.org -> LaTeX converter... INFO: +checking for "w2l"... no DEBUG: Add to RC: \converter sxw latex "" "" INFO: checking for an OpenDocument -> LaTeX converter... INFO: +checking for "w2l"... no DEBUG: Add to RC: \converter odt latex "" "" INFO: checking for an Open Document (Pandoc) -> LaTeX converter... INFO: +checking for "pandoc"... yes DEBUG: Add to RC: \converter odt3 latex "pandoc -s -f odt -o $$o -t latex $$i" "" INFO: checking for a MS Word Office Open XML converter -> LaTeX... INFO: +checking for "pandoc"... yes DEBUG: Add to RC: \converter word2 latex "pandoc -s -f docx -o $$o -t latex $$i" "" INFO: checking for an OpenDocument -> PDF converter... INFO: +checking for "unoconv"... no DEBUG: Add to RC: \converter odt pdf6 "" "" INFO: checking for a LaTeX -> Open Document (tex4ht) converter... INFO: +checking for "oolatex"... no INFO: +checking for "mk4ht"... yes DEBUG: Add to RC: \converter latex odt "mk4ht oolatex $$i" "needaux" INFO: checking for a LaTeX -> RTF converter... INFO: +checking for "latex2rtf"... no INFO: +checking for "latex2rt"... no DEBUG: Add to RC: \converter latex rtf "" "needaux" INFO: checking for a LaTeX -> Open Document (Pandoc) converter... INFO: +checking for "pandoc"... yes DEBUG: Add to RC: \converter latex odt3 "pandoc -s -f latex -o $$o -t odt $$i" "" INFO: checking for a LaTeX -> MS Word Office Open XML converter... INFO: +checking for "pandoc"... yes DEBUG: Add to RC: \converter latex word2 "pandoc -s -f latex -o $$o -t docx $$i" "" INFO: checking for a RTF -> HTML converter... INFO: +checking for "unrtf"... no DEBUG: Add to RC: \converter rtf html "" "" INFO: checking for a PS to PDF converter... INFO: +checking for "ps2pdf"... yes DEBUG: Add to RC: \converter ps pdf "ps2pdf $$i $$o" "" INFO: checking for a PS to TXT converter... INFO: +checking for "pstotext"... no DEBUG: Add to RC: \converter ps text2 "" "" INFO: checking for a PS to TXT converter... INFO: +checking for "ps2ascii"... yes DEBUG: Add to RC: \converter ps text3 "ps2ascii $$i $$o" "" INFO: checking for a PS to EPS converter... INFO: +checking for "ps2eps"... yes DEBUG: Add to RC: \converter eps2 eps "ps2eps -- < $$i > $$o" "" INFO: checking for a PDF to PS converter... INFO: +checking for "pdftops"... yes DEBUG: Add to RC: \converter pdf ps "pdftops $$i $$o" "" INFO: checking for a PDF to EPS converter... INFO: +checking for "pdftops"... yes DEBUG: Add to RC: \converter pdf6 eps "pdftops -eps -f 1 -l 1 $$i $$o" "" INFO: checking for a PDF cropping tool... INFO: +checking for "pdfcrop"... yes DEBUG: Add to RC: \converter pdf2 pdf7 "pdfcrop $$i $$o" "" \converter pdf4 pdf7 "pdfcrop $$i $$o" "" INFO: checking for Ghostscript... INFO: +checking for "gswin32c"... no INFO: +checking for "gswin64c"... no INFO: +checking for "gs"... yes DEBUG: Add to RC: \converter pdf2 pdf8 "python -tt $$s/scripts/convert_pdf.py $$i $$o ebook" "" \converter pdf4 pdf8 "python -tt $$s/scripts/convert_pdf.py $$i $$o ebook" "" INFO: checking for a Beamer info extractor... INFO: +checking for "makebeamerinfo"... no DEBUG: Add to RC: \converter pdf2 beamer.info "" "" INFO: checking for a DVI to TXT converter... INFO: +checking for "catdvi"... no DEBUG: Add to RC: \converter dvi text4 "" "" INFO: checking for a DVI to PS converter... INFO: +checking for "dvips"... yes DEBUG: Add to RC: \converter dvi ps "dvips -o $$o $$i" "" INFO: checking for a DVI to cropped EPS converter... INFO: +checking for "dvips"... yes DEBUG: Add to RC: \converter dvi eps3 "dvips -E -o $$o $$i" "" INFO: checking for a DVI to PDF converter... INFO: +checking for "dvipdfmx"... yes DEBUG: Add to RC: \converter dvi pdf3 "dvipdfmx -o $$o $$i" "" INFO: checking for a fax program... INFO: +checking for "kdeprintfax"... no INFO: +checking for "ksendfax"... no INFO: +checking for "hylapex"... no DEBUG: Add to RC: \converter ps fax "" "" INFO: checking for a FIG -> Image converter... INFO: +checking for "fig2dev"... yes DEBUG: Add to RC: \converter fig eps "fig2dev -L eps $$i $$o" "" \converter fig ppm "fig2dev -L ppm $$i $$o" "" \converter fig svg "fig2dev -L svg $$i $$o" "" \converter fig png "fig2dev -L png $$i $$o" "" \converter fig pdftex "python -tt $$s/scripts/fig2pdftex.py $$i $$o" "" \converter fig pstex "python -tt $$s/scripts/fig2pstex.py $$i $$o" "" INFO: checking for a TIFF -> PS converter... INFO: +checking for "tiff2ps"... no DEBUG: Add to RC: \converter tiff eps "" "" INFO: checking for a TGIF -> EPS/PPM converter... INFO: +checking for "tgif"... no DEBUG: Add to RC: \converter tgif eps "tgif -print -color -eps -stdout $$i > $$o" "" \converter tgif png "tgif -print -color -png -o $$d $$i" "" \converter tgif pdf6 "tgif -print -color -pdf -stdout $$i > $$o" "" INFO: checking for a WMF -> EPS converter... INFO: +checking for "metafile2eps"... no INFO: +checking for "wmf2eps"... yes DEBUG: Add to RC: \converter wmf eps "wmf2eps -o $$o $$i" "" INFO: checking for an EMF -> EPS converter... INFO: +checking for "metafile2eps"... no INFO: +checking for "wmf2eps"... yes DEBUG: Add to RC: \converter emf eps "wmf2eps -o $$o $$i" "" INFO: checking for a WMF -> PDF converter... INFO: +checking for "inkscape"... no DEBUG: Add to RC: \converter wmf pdf6 "" "" INFO: checking for an EMF -> PDF converter... INFO: +checking for "inkscape"... no DEBUG: Add to RC: \converter emf pdf6 "" "" INFO: checking for an EPS -> PDF converter... INFO: +checking for "epstopdf"... yes DEBUG: Add to RC: \converter eps pdf6 "epstopdf --outfile=$$o $$i" "" INFO: checking for an EPS -> PNG converter... INFO: +checking for "magick"... no INFO: +checking for "convert"... yes DEBUG: Add to RC: \converter eps png "convert $$i $$o" "" INFO: checking for a Grace -> Image converter... INFO: +checking for "gracebat"... no DEBUG: Add to RC: \converter agr eps "gracebat -hardcopy -printfile $$o -hdevice EPS $$i 2>/dev/null" "" \converter agr png "gracebat -hardcopy -printfile $$o -hdevice PNG $$i 2>/dev/null" "" \converter agr jpg "gracebat -hardcopy -printfile $$o -hdevice JPEG $$i 2>/dev/null" "" \converter agr ppm "gracebat -hardcopy -printfile $$o -hdevice PNM $$i 2>/dev/null" "" INFO: checking for a Dot -> Image converter... INFO: +checking for "dot"... no DEBUG: Add to RC: \converter dot eps "dot -Teps $$i -o $$o" "" \converter dot png "dot -Tpng $$i -o $$o" "" INFO: checking for a Dia -> Image converter... INFO: +checking for "dia"... no INFO: checking for an OpenDocument -> EPS converter... INFO: +checking for "libreoffice"... yes DEBUG: Add to RC: \converter odg eps2 "libreoffice -headless -nologo -convert-to eps $$i" "" INFO: checking for a SVG (compressed) -> SVG converter... INFO: +checking for "gunzip"... yes DEBUG: Add to RC: \converter svgz svg "gunzip -c $$i > $$o" "" INFO: checking for a SVG -> SVG (compressed) converter... INFO: +checking for "gzip"... yes DEBUG: Add to RC: \converter svg svgz "gzip -c $$i > $$o" "" INFO: checking for a SVG -> PDF converter... INFO: +checking for "rsvg-convert"... no INFO: +checking for "inkscape"... no DEBUG: Add to RC: \converter svg pdf6 "" "" \converter svgz pdf6 "" "" INFO: checking for a SVG -> EPS converter... INFO: +checking for "rsvg-convert"... no INFO: +checking for "inkscape"... no DEBUG: Add to RC: \converter svg eps "" "" \converter svgz eps "" "" INFO: checking for a SVG -> PNG converter... INFO: +checking for "rsvg-convert"... no INFO: +checking for "inkscape"... no DEBUG: Add to RC: \converter svg png "" "", \converter svgz png "" "" INFO: checking for a spreadsheet -> latex converter... INFO: +checking for "ssconvert"... yes DEBUG: Add to RC: \converter gnumeric latex "ssconvert --export-type=Gnumeric_html:latex $$i $$o" "" \converter oocalc latex "ssconvert --export-type=Gnumeric_html:latex $$i $$o" "" \converter excel latex "ssconvert --export-type=Gnumeric_html:latex $$i $$o" "" \converter excel2 latex "ssconvert --export-type=Gnumeric_html:latex $$i $$o" "" \converter gnumeric html_table "ssconvert --export-type=Gnumeric_html:html40frag $$i $$o" "" \converter oocalc html_table "ssconvert --export-type=Gnumeric_html:html40frag $$i $$o" "" \converter excel html_table "ssconvert --export-type=Gnumeric_html:html40frag $$i $$o" "" \converter excel2 html_table "ssconvert --export-type=Gnumeric_html:html40frag $$i $$o" "" INFO: checking for a LilyPond -> EPS/PDF/PNG converter... INFO: +checking for "lilypond"... no INFO: checking for a LilyPond book (LaTeX) -> LaTeX converter... INFO: +checking for "lilypond-book"... no INFO: checking for a Noteedit -> LilyPond converter... INFO: +checking for "noteedit"... no DEBUG: Add to RC: \converter noteedit lilypond "" "" DEBUG: Add to RC: \Format lyxgz gz "LyX Archive (tar.gz)" "" "" "" "document,menu=export" "" DEBUG: Add to RC: \converter lyx lyxgz "python -tt $$s/scripts/lyxpak.py $$r/$$f" "" DEBUG: Add to RC: \converter csv lyx "python -tt $$s/scripts/csv2lyx.py $$i $$o" "" \converter date dateout "python -tt $$s/scripts/date.py %d-%m-%Y > $$o" "" \converter docbook docbook-xml "cp $$i $$o" "xml" \converter fen asciichess "python -tt $$s/scripts/fen2ascii.py $$i $$o" "" \converter lyx lyx13x "python -tt $$s/lyx2lyx/lyx2lyx -V 1.3 -o $$o $$i" "" \converter lyx lyx14x "python -tt $$s/lyx2lyx/lyx2lyx -V 1.4 -o $$o $$i" "" \converter lyx lyx15x "python -tt $$s/lyx2lyx/lyx2lyx -V 1.5 -o $$o $$i" "" \converter lyx lyx16x "python -tt $$s/lyx2lyx/lyx2lyx -V 1.6 -o $$o $$i" "" \converter lyx lyx20x "python -tt $$s/lyx2lyx/lyx2lyx -V 2.0 -o $$o $$i" "" \converter lyx lyx21x "python -tt $$s/lyx2lyx/lyx2lyx -V 2.1 -o $$o $$i" "" \converter lyx clyx "python -tt $$s/lyx2lyx/lyx2lyx -V 1.4 -o $$o -c big5 $$i" "" \converter lyx jlyx "python -tt $$s/lyx2lyx/lyx2lyx -V 1.4 -o $$o -c euc_jp $$i" "" \converter lyx klyx "python -tt $$s/lyx2lyx/lyx2lyx -V 1.4 -o $$o -c euc_kr $$i" "" \converter clyx lyx "python -tt $$s/lyx2lyx/lyx2lyx -c big5 -o $$o $$i" "" \converter jlyx lyx "python -tt $$s/lyx2lyx/lyx2lyx -c euc_jp -o $$o $$i" "" \converter klyx lyx "python -tt $$s/lyx2lyx/lyx2lyx -c euc_kr -o $$o $$i" "" \converter lyxpreview png "python -tt $$s/scripts/lyxpreview2bitmap.py --png" "" \converter lyxpreview ppm "python -tt $$s/scripts/lyxpreview2bitmap.py --ppm" "" INFO: checking for SGML-tools 2.x (DocBook), db2x scripts or xsltproc... INFO: +checking for "sgmltools"... no INFO: +checking for "db2dvi"... no INFO: +checking for "xsltproc"... no DEBUG: Add to RC: \converter docbook dvi "" "" \converter docbook html "" "" INFO: Checking whether TeX allows spaces in file names... yes DEBUG: Add to RC: \tex_allows_spaces true DEBUG: Removing file a b.tex DEBUG: Removing file a b.log DEBUG: Failed to remove file texput.log INFO: checking for ChkTeX... INFO: +checking for "chktex"... yes DEBUG: Add to RC: \chktex_command "chktex -n1 -n3 -n6 -n9 -n22 -n25 -n30 -n38" INFO: checking for BibTeX or alternative programs... INFO: +checking for "bibtex"... yes DEBUG: Add to RC: \bibtex_command "bibtex" DEBUG: Add to RC: \bibtex_alternatives "bibtex" INFO: +checking for "bibtex8"... yes DEBUG: Add to RC: \bibtex_alternatives "bibtex8" INFO: +checking for "biber"... yes DEBUG: Add to RC: \bibtex_alternatives "biber" INFO: checking for a specific Japanese BibTeX variant... INFO: +checking for "pbibtex"... yes DEBUG: Add to RC: \jbibtex_command "pbibtex" INFO: checking for available index processors... INFO: +checking for "texindy"... no INFO: +checking for "makeindex"... yes DEBUG: Add to RC: \index_command "makeindex -c -q" DEBUG: Add to RC: \index_alternatives "makeindex -c -q" INFO: +checking for "xindy"... no INFO: checking for an index processor appropriate to Japanese... INFO: +checking for "mendex"... yes DEBUG: Add to RC: \jindex_command "mendex -c -q" INFO: checking for the splitindex processor... INFO: +checking for "splitindex.pl"... no INFO: +checking for "splitindex"... yes DEBUG: Add to RC: \splitindex_command "splitindex" INFO: checking for a nomenclature processor... INFO: +checking for "makeindex"... yes DEBUG: Add to RC: \nomencl_command "makeindex -s nomencl.ist" DEBUG: Add to RC: \copier fig "python -tt $$s/scripts/fig_copy.py $$i $$o" \copier pstex "python -tt $$s/scripts/tex_copy.py $$i $$o $$l" \copier pdftex "python -tt $$s/scripts/tex_copy.py $$i $$o $$l" \copier program "python -tt $$s/scripts/ext_copy.py $$i $$o" INFO: +Indexing TeX files... INFO: Indexing files of type cls Indexing files of type sty Indexing files of type bst Indexing files of type bib INFO: done DEBUG: Removing file lyxmodules.lst DEBUG: Failed to remove file chkmodules.tex INFO: +checking list of modules... INFO: layouts/longtablepage.module INFO: layouts/short-inset-names.module INFO: /usr/share/lyx/layouts/minimalistic.module INFO: /usr/share/lyx/layouts/varwidth.module INFO: /usr/share/lyx/layouts/pdfcomment.module INFO: /usr/share/lyx/layouts/algorithm2e.module INFO: /usr/share/lyx/layouts/logicalmkup.module INFO: /usr/share/lyx/layouts/sweave.module INFO: /usr/share/lyx/layouts/paralist.module INFO: /usr/share/lyx/layouts/enumitem.module INFO: /usr/share/lyx/layouts/todonotes.module INFO: /usr/share/lyx/layouts/theorems-starred.module INFO: /usr/share/lyx/layouts/figs-within-sections.module INFO: /usr/share/lyx/layouts/sectionbox.module INFO: /usr/share/lyx/layouts/InStar.module INFO: /usr/share/lyx/layouts/hpstatement.module INFO: /usr/share/lyx/layouts/theorems-sec.module INFO: /usr/share/lyx/layouts/theorems-bytype.module INFO: /usr/share/lyx/layouts/theorems-named.module INFO: /usr/share/lyx/layouts/theorems-ams-extended.module INFO: /usr/share/lyx/layouts/rsphrase.module INFO: /usr/share/lyx/layouts/natbibapa.module INFO: /usr/share/lyx/layouts/pdfform.module INFO: /usr/share/lyx/layouts/theorems-ams-extended-chap-bytype.module INFO: /usr/share/lyx/layouts/theorems-sec-bytype.module INFO: /usr/share/lyx/layouts/theorems-chap.module INFO: /usr/share/lyx/layouts/bicaption.module INFO: /usr/share/lyx/layouts/theorems-ams.module INFO: /usr/share/lyx/layouts/shapepar.module INFO: /usr/share/lyx/layouts/endnotes.module INFO: /usr/share/lyx/layouts/fixme.module INFO: /usr/share/lyx/layouts/initials.module INFO: /usr/share/lyx/layouts/hanging.module INFO: /usr/share/lyx/layouts/theorems-chap-bytype.module INFO: /usr/share/lyx/layouts/knitr.module INFO: /usr/share/lyx/layouts/jurabib.module INFO: /usr/share/lyx/layouts/theorems-std.module INFO: /usr/share/lyx/layouts/tcolorbox.module INFO: /usr/share/lyx/layouts/theorems-ams-extended-bytype.module INFO: /usr/share/lyx/layouts/lilypond.module INFO: /usr/share/lyx/layouts/natbib.module INFO: /usr/share/lyx/layouts/fix-cm.module INFO: /usr/share/lyx/layouts/foottoend.module INFO: /usr/share/lyx/layouts/noweb.module INFO: /usr/share/lyx/layouts/eqs-within-sections.module INFO: /usr/share/lyx/layouts/multicol.module INFO: /usr/share/lyx/layouts/changebars.module INFO: /usr/share/lyx/layouts/theorems-ams-chap-bytype.module INFO: /usr/share/lyx/layouts/braille.module INFO: /usr/share/lyx/layouts/graphicboxes.module INFO: /usr/share/lyx/layouts/theorems-ams-bytype.module INFO: /usr/share/lyx/layouts/linguistics.module INFO: /usr/share/lyx/layouts/customHeadersFooters.module INFO: /usr/share/lyx/layouts/tabs-within-sections.module INFO: /usr/share/lyx/layouts/fixltx2e.module INFO: /usr/share/lyx/layouts/basic.module INFO: done INFO: checking LaTeX configuration... auto DEBUG: Failed to remove file chkconfig.classes DEBUG: Failed to remove file chkconfig.vars DEBUG: Failed to remove file chklayouts.tex DEBUG: Failed to remove file wrap_chkconfig.ltx INFO: +Inspecting your LaTeX configuration. INFO: +checking for LaTeX version... 2017/01/01 INFO: +checking for available hyphenation patterns... INFO: +checking for default encoding (this may take a long time) INFO: + checking for ec fonts... yes INFO: + checking for ec support in LaTeX format... yes INFO: + default encoding will be set to T1 INFO: +checking for package a0poster [a0poster]... no INFO: +checking for package accents [accents]... yes INFO: +checking for package achicago [achicago]... yes INFO: +checking for package algorithm [algorithm]... yes INFO: +checking for package algorithm2e [algorithm2e]... yes INFO: +checking for package amsmath [amsmath]... yes INFO: +checking for package amstext [amstext]... yes INFO: +checking for package apacite [apacite]... yes INFO: +checking for package apalike [apalike]... yes INFO: +checking for package arabi [arabic.ldf]... yes INFO: +checking for package array [array]... yes INFO: +checking for package astron [astron]... no INFO: +checking for package authordate1-4 [authordate1-4]... no INFO: +checking for package babel [babel]... yes INFO: +checking for package beamerposter [beamerposter]... yes INFO: +checking for package bibtopic [bibtopic]... yes INFO: +checking for package bicaption [bicaption]... yes INFO: +checking for package bidi [bidi]... yes INFO: +checking for package bm [bm]... yes INFO: +checking for package booktabs [booktabs]... yes INFO: +checking for package braille [braille]... yes INFO: +checking for package breakurl [breakurl]... yes INFO: +checking for package CJKutf8 [CJKutf8]... yes INFO: +checking for package calc [calc]... yes INFO: +checking for package cancel [cancel]... yes INFO: +checking for package chemgreek [chemgreek]... yes INFO: +checking for package chicago [chicago]... yes INFO: +checking for package color [color]... yes INFO: +checking for package covington [covington]... yes INFO: +checking for package csquotes [csquotes]... yes INFO: +checking for package cyrillic [koi8-r.def]... yes INFO: +checking for package dvipost [dvipost]... no INFO: +checking for package endnotes [endnotes]... yes INFO: +checking for package enumitem [enumitem]... yes INFO: +checking for package environ [environ]... yes INFO: +checking for package esint [esint]... yes INFO: +checking for package eso-pic [eso-pic]... yes INFO: +checking for package fancybox [fancybox]... yes INFO: +checking for package fancyhdr [fancyhdr]... yes INFO: +checking for package filehook [filehook]... yes INFO: +checking for package fixltx2e [fixltx2e]... yes INFO: +checking for package fix-cm [fix-cm]... yes INFO: +checking for package float [float]... yes INFO: +checking for package fontspec [fontspec]... yes INFO: +checking for package footmisc [footmisc]... yes INFO: +checking for package forest [forest]... yes INFO: +checking for package framed [framed]... yes INFO: +checking for package geometry [geometry]... yes INFO: +checking for package graphicx [graphicx]... yes INFO: +checking for package greek-inputenc [iso-8859-7.def]... yes INFO: +checking for package harvard [harvard]... yes INFO: +checking for package hhline [hhline]... yes INFO: +checking for package hyperref [hyperref]... yes INFO: +checking for package hyphenat [hyphenat]... yes INFO: +checking for package iftex [iftex]... yes INFO: +checking for package ifthen [ifthen]... yes INFO: +checking for package japanese [japanese.ldf]... yes INFO: +checking for package jurabib [jurabib]... yes INFO: +checking for package latex8 [latex8]... no INFO: +checking for package lettrine [lettrine]... yes INFO: +checking for package listings [listings]... yes INFO: +checking for package lithuanian [lithuanian.ldf]... yes INFO: +checking for package longtable [longtable]... yes INFO: +checking for package luainputenc [luainputenc]... yes INFO: +checking for package mathdots [mathdots]... yes INFO: +checking for package mathrsfs [mathrsfs]... yes INFO: +checking for package mathtools [mathtools]... yes INFO: +checking for package mhchem [mhchem]... yes INFO: +checking for package mongolian [mongolian.ldf]... yes INFO: +checking for package mslapa [mslapa]... yes INFO: +checking for package multirow [multirow]... yes INFO: +checking for package named [named]... no INFO: +checking for package natbib [natbib]... yes INFO: +checking for package nicefrac [nicefrac]... yes INFO: +checking for package nomencl [nomencl]... yes INFO: +checking for package paralist [paralist]... yes INFO: +checking for package pdfcolmk [pdfcolmk]... yes INFO: +checking for package polyglossia [polyglossia]... yes INFO: +checking for package pdfcomment [pdfcomment]... yes INFO: +checking for package pdfpages [pdfpages]... yes INFO: +checking for package pgf [pgf]... yes INFO: +checking for package prettyref [prettyref]... yes INFO: +checking for package preview [preview]... yes INFO: +checking for package refstyle [refstyle]... yes INFO: +checking for package rotating [rotating]... yes INFO: +checking for package rotfloat [rotfloat]... yes INFO: +checking for package sciposter [sciposter]... no INFO: +checking for package sectionbox [sectionbox]... yes INFO: +checking for package serbianc [serbianc.ldf]... yes INFO: +checking for package setspace [setspace]... yes INFO: +checking for package slashed [slashed]... yes INFO: +checking for package soul [soul]... yes INFO: +checking for package splitidx [splitidx]... yes INFO: +checking for package stackrel [stackrel]... yes INFO: +checking for package stmaryrd [stmaryrd]... yes INFO: +checking for package subfig [subfig]... yes INFO: +checking for package subscript [subscript]... yes INFO: +checking for package Sweave [Sweave]... yes INFO: +checking for package tcolorbox [tcolorbox]... yes INFO: +checking for package textcomp [textcomp]... yes INFO: +checking for package thswitch [thswitch]... no INFO: +checking for package turkmen [turkmen.ldf]... yes INFO: +checking for package ulem [ulem]... yes INFO: +checking for package undertilde [undertilde]... no INFO: +checking for package unicode-math [unicode-math]... yes INFO: +checking for package units [units]... yes INFO: +checking for package url [url]... yes INFO: +checking for package varioref [varioref]... yes INFO: +checking for package varwidth [varwidth]... yes INFO: +checking for package vietnamese [vietnamese.ldf]... yes INFO: +checking for package wallpaper [wallpaper]... yes INFO: +checking for package wrapfig [wrapfig]... yes INFO: +checking for package xargs [xargs]... yes INFO: +checking for package xcolor [xcolor]... yes INFO: +checking for package xetex-def [xetex.def]... yes INFO: +checking for package xkeyval [xkeyval]... yes INFO: +checking for package arydshln [arydshln]... yes INFO: +checking for package braket [braket]... yes INFO: +checking for package cancel [cancel]... yes INFO: +checking for package caption [caption]... yes INFO: +checking for package colortbl [colortbl]... yes INFO: +checking for package diagbox [diagbox]... yes INFO: +checking for package etoolbox [etoolbox]... yes INFO: +checking for package eurosym [eurosym]... yes INFO: +checking for package fp [fp]... yes INFO: +checking for package makecmds [makecmds]... yes INFO: +checking for package marginnote [marginnote]... yes INFO: +checking for package picinpar [picinpar]... yes INFO: +checking for package pict2e [pict2e]... yes INFO: +checking for package sidecap [sidecap]... yes INFO: +checking for package upgreek [upgreek]... yes INFO: +checking for package psnfss [times.sty]... yes INFO: +checking for package avant [avant]... yes INFO: +checking for package bookman [bookman]... yes INFO: +checking for package chancery [chancery]... yes INFO: +checking for package charter [charter]... yes INFO: +checking for package courier [courier]... yes INFO: +checking for package helvet [helvet]... yes INFO: +checking for package mathpazo [mathpazo]... yes INFO: +checking for package mathpple [mathpple]... yes INFO: +checking for package mathptm [mathptm]... yes INFO: +checking for package mathptmx [mathptmx]... yes INFO: +checking for package newcent [newcent]... yes INFO: +checking for package pifont [pifont]... yes INFO: +checking for package utopia [utopia]... yes INFO: +checking for package ae [ae]... yes INFO: +checking for package bera [bera]... yes INFO: +checking for package biolinum-type1 [biolinum-type1]... yes INFO: +checking for package ccfonts [ccfonts]... yes INFO: +checking for font concrete [ccr10]... yes INFO: +checking for font ecc [eorm10]... yes INFO: +checking for package concmath [ot1ccr.fd]... yes INFO: +checking for package cmbright [cmbright]... yes INFO: +checking for package eco [eco]... yes INFO: +checking for package eulervm [eulervm]... yes INFO: +checking for package feyn [feyn]... yes INFO: +checking for package fourier [fourier]... yes INFO: +checking for package garamondx [garamondx]... no INFO: +checking for font garamondx-fonts [zgmr8r]... no INFO: +checking for package iwona [iwona]... yes INFO: +checking for package kurier [kurier]... yes INFO: +checking for package lh-lcy [lh-lcy]... yes INFO: +checking for package libertine [libertine]... yes INFO: +checking for package fontaxes [fontaxes]... yes INFO: +checking for package libertine-type1 [libertine-type1]... yes INFO: +checking for package libertineMono-type1 [libertineMono-type1]... yes INFO: +checking for package lmodern [lmodern]... yes INFO: +checking for package luximono [luximono]... no INFO: +checking for package mathdesign [mathdesign]... yes INFO: +checking for package mdbch [mdbch]... yes INFO: +checking for package mdput [mdput]... yes INFO: +checking for package mdugm [mdugm]... yes INFO: +checking for package MinionPro [MinionPro]... no INFO: +checking for font minion2newtx [rzmnr]... no INFO: +checking for package newtxmath [newtxmath]... yes INFO: +checking for package binhex [binhex.tex]... yes INFO: +checking for font symbol [psyr]... yes INFO: +checking for package tgadventor [tgadventor]... yes INFO: +checking for package tgbonum [tgbonum]... yes INFO: +checking for package tgchorus [tgchorus]... yes INFO: +checking for package tgcursor [tgcursor]... yes INFO: +checking 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