4,1),
> key=simpleKey(title="Survived", text=levels(Titan$Survived),
>rectangles=TRUE, points=FALSE, columns=2))
>
> Paul
>
> On 28/07/16 09:02, Seth Bigelow wrote:
>
>> I have constructed a barchart that requires a panel call, but
ain these
blocks with panel.barchart?
--
Seth W. Bigelow, Ph.D.
Assistant Scientist of Forest Ecology
Joseph W. Jones Ecological Research Center
Newton, GA
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Hi,
I am getting the following error:
Error in if ((sum > 0 && sums1 > 0 && sums2 > 0) != NA) { :
missing value where TRUE/FALSE needed
I have including my code below for your review:
fitness_1_data
[[alternative HTML version deleted]]
Hi,
I have implemented following program in R, that reads data from the
"dtm_mydata.csv". file size is
114,029 kB, saved document Term matrix. Prog. performing some calculation and
writing in a file. my
computer RAM is 16 GB. To execute this program its taking around 25 hours. can
any
i have a text file with data of the given format:
white snow
lived snow
in snow
lived place
in place
a place
called place
as place
here i have to find the frequency of the terms only in the first column
(i.e.)
white - 1
lived- 2
in -2
a-1
called - 1
as -1
Could you please guide me how to do the
20,TC146,2010,1.94,NA
Seth W. Bigelow
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Petr,
Your code works therefore I pronounce it beautiful.
Many many thanks
--Seth
-Original Message-
From: PIKAL Petr [mailto:petr.pi...@precheza.cz]
Sent: Tuesday, February 10, 2015 11:23 AM
To: Seth Bigelow; r-help@r-project.org
Subject: RE: [R] function that calculates using
Aha, this solution is even more elegant than that of the previous suggestion.
Thanks for alerting me to the capabilities of plyr!
--Seth
-Original Message-
From: Dennis Murphy [mailto:djmu...@gmail.com]
Sent: Tuesday, February 10, 2015 2:14 PM
To: Seth Bigelow
Subject: Re: [R] function
I wish to shrink the automatically inserted blank space at either end
of the x axis of my area plot, so that the colorful graphic in the
center takes up more of the available space. When I use the
scale_x_discrete(limits...) command to expand the displayed area, the
graphic shrinks away from the
expand works perfectly, thanks VERY much Ista!
-Seth
- Original Message -
From: Ista Zahn
To:
Cc:
Sent:Thu, 26 Jun 2014 14:35:19 -0400
Subject:Re: [R] decreasing blank space in ggplot2 geom_area
Hi Seth,
See the expand argument to ?discrete_scale
Best,
Ista
On Thu, Jun 26, 2014
., L-627
Livermore, CA 94550
925-423-1062
On 9/15/13 9:43 AM, Ankur Seth ankurset...@gmail.com wrote:
I want to put labels a,b,c,d on the data points
x-data.frame(c(1,2,3,4),c(1,4,9,16),c(a,b,c,d),
as.Date(c(01-10-2013, 02-10-2013,03-10-2013,04-10-2013),
%d-%m-%Y))
colnames(x)-c(x, sq
(data)
plot(data)
--
Regards,
Ankur Seth
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is the problem that you are trying to solve?
Tell me what you want to do, not how you want to do it.
On Sun, Sep 15, 2013 at 11:37 AM, Ankur Seth ankurset...@gmail.com
wrote:
I need to put labels in plot in R. Can someone please help? The labels
are
in the excel file and loaded
.
Is there a way to do this in R?
Regards,
Ankur Seth
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Thanks Rui, but this does not change the value in the new column
automatically if I change the value in the data column. Any ideas?
Regards,
Ankur Seth
On Sat, Sep 7, 2013 at 2:11 PM, Rui Barradas ruipbarra...@sapo.pt wrote:
Hello,
Try the following.
dat - read.table(text =
Date
Is there a way in which I can setup a model like that?
Regards,
Ankur Seth
On Sat, Sep 7, 2013 at 4:49 PM, Rui Barradas ruipbarra...@sapo.pt wrote:
Hello,
It will not change the value automatically, you will have to rerun the
code.
Rui Barradas
Em 07-09-2013 11:52, Ankur Seth escreveu
Let's say I would like to look inside the function corBrownian in library
(ape). When I type in the function name I get the following, which is not
nearly the detail that goes into this function. I am wondering how to
begin cracking this function open (and others) so I can learn more about it
what I intended.
Any input is appreciated.
Seth Myers
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I thought that I can use metacharacters such as \w to match word characters
with one backslash. But for some reason, I need to include two backslashes.
grepl(pattern='\w', x=what)
Error: '\w' is an unrecognized escape in character string starting \w
grepl(pattern='\\w', x=what)
[1] TRUE
I
), and ANCOVA,
which can test for differences in the y-intercepts. Any help would be much
appreciated.
Thanks,
Seth
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(expand.grid(c(1:10), c(1:10)))
z = test[,1] + test[,2]
test = cbind(test, z)
names(test) = c(x, y, z)
require(lattice)
wireframe(z ~ x*y, data = test,
scales=list(arrows=F),
par.settings = list(axis.line = list(col = transparent)),
)
Is there a way to eliminate the box but keep the ticks?
Seth W
, in the software, to
the outer box. I'm assembling a number of these graphs on one page, and the
outer box makes the whole figure look clunky. Lattice is an incredible piece of
software! but these small details can be difficult to nail down.
--Seth
-Original Message-
From: ila...@gmail.com
= test,
scales=list(arrows=F,col=1),
par.settings = list(axis.line = list(col = transparent)),
)
Many thanks!!!
--Seth
This electronic message contains information generated by the USDA solely for
the intended recipients. Any unauthorized interception of this message or the
use or disclosure
containing
tables with more than 2000 columns may not be compatible with
versions of SQLite compiled with default settings.
- Upgrade to SQLite 3.7.9.
--
Seth Falcon | @sfalcon | http://userprimary.net/
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r-packa...@r
in the repository if an error is encountered when trying
to read the downloaded PACKAGES.gz file.
Thanks,
Seth
R Version:
platform = i386-pc-mingw32
arch = i386
os = mingw32
system = i386, mingw32
status = Patched
major = 2
minor = 13.1
year = 2011
month = 08
day = 19
svn rev = 56771
language = R
); it seems there should be a simpler method I am not
finding.
Anyone have a quick point to a package/function that will optimze weights in
a weighted average or similarly allow a constraint of all regression
coefficients sum to 1?
Thanks,
Seth
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of each list
mylist = list(c(1,2,3),c(cat,dog),c(x,y,z,zz)) # Create
list
last - sapply(mylist,length) # Make vector with list lengths
last_only - mylist[[1:length(mylist)]][last] # Crash and burn trying to
make new vector with last items!
How do I do this last step?
Dr. Seth W
to create a new table from an existing table using
SQL where the new table has the types you want.
+ seth
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PLEASE do read
scores are equal from the two models. I have not been able to find an R
function to do this, can someone point me to the appropriate library and
function if one exists? Thanks, Seth
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to extract the month
mydate$mon
[1] 3
it returns the wrong month. And mydate$year is off by about 2,000 years.
Am I doing something wrong?
Dr. Seth W. Bigelow
Biologist, USDA-FS Pacific Southwest Research Station
1731 Research Park Drive, Davis California
sbige...@fs.fed.us / ph. 530 759 1718
On Tue, Mar 1, 2011 at 10:06 AM, chen jia chen_1...@fisher.osu.edu wrote:
Hi Seth,
Thanks so much for identifying the problem and explaining everything.
I think the first solution that you suggest--make sure the schema has
well defined types--would work the best for me. But, I have one
] tools_2.11.1
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and provide commented
and convert
if needed at the R level.
- remove NA/NULL values from the db or decide on a different way of
encoding them (e.g you might be able to use -1 in the db in some
situation to indicate missing). Your R code would then need to map
these to proper NA.
Hope that helps.
+ seth
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of any R implementation of this distribution?
Dr. Seth W. Bigelow
Biologist, USDA-FS Pacific Southwest Research Station
1731 Research Park Drive, Davis California
sbige...@fs.fed.us / ph. 530 759 1718
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in order to write it, but
haven't used it much since :-P
Be sure to look at R's native environment objects which provide a hash
table structure and are suitable for many uses.
+ seth
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coplot() usually puts grid lines in the panels it makes. To see examples,
example(coplot).
How can I remove those grid lines?
Seth Roberts
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Hi Abhijit,
[I've cc'd R-help to keep the discussion on the list]
On Tue, Nov 16, 2010 at 8:06 AM, Abhijit Dasgupta
adasgu...@araastat.com wrote:
Seth,
I was looking for something like this too. I've a question. If
you're reading the data from a connection, does R start reading the
next
= )
dbGetPreparedQuery(db, sql.in, bind.data = part)
}
}, error = function(e) {
if (grepl(no lines available, conditionMessage(e)))
TRUE
else
stop(conditionMessage(e))
})
dbCommit(db)
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together in a data frame
d$scaled - d$variable/(with(d,tapply(variable,group,max))) #
crash and burn
Dr. Seth W. Bigelow
Biologist, USDA-FS Pacific Southwest Research Station
1731 Research Park Drive, Davis California
bill.venab...@csiro.au
09/20/2010 06:24 PM
To
michael.bedw
Bill,
I'd never heard of ave( ) before, but it works like a charm for the
purpose outlined below
Thanks!!
Dr. Seth W. Bigelow
Biologist, USDA-FS Pacific Southwest Research Station
1731 Research Park Drive, Davis California
William Dunlap wdun...@tibco.com
09/21/2010 08:52 AM
To
Seth W
Aah, that is the sort of truly elegant solution I have been seeking. And
it's wrapped up in a nice programming shortcut to boot (i.e., the within
statement). I retract anything I may have said about tapply being clunky.
Many thanks
--Seth
Dr. Seth W. Bigelow
Biologist, USDA-FS Pacific
. but that
seems awkward and bulky, is there a simpler way?
Dr. Seth W. Bigelow
Biologist, USDA-FS Pacific Southwest Research Station
1731 Research Park Drive, Davis California
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, you typically use
source packages and native code is compiled as part of the R package
installation process. In this case, you don't have to worry about 32/64
bit and the right thing should happen.
I'd suggest reading through the manuals that come with R for more
details and suggestions.
+ seth
dbGetQuery instead and skip
dealing with the result set and fetch.
Or you can call fetch again and get the next 500 rows...
+ seth
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to obtain a 64
bit package.
install.packages(RSQLite, type=source)
+ seth
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and provide commented
to retrieve
the values for column named X1. Seth
table.1-cbind(c(1,2,3,2,2),c(0,9,0,7,9),c(7,5,9,8,8))
table.1
[,1] [,2] [,3]
[1,]107
[2,]295
[3,]309
[4,]278
[5,]298
table.1-data.frame(table.1)
table.1
X1 X2 X3
1 1 0 7
2 2 9
On Mon, Jul 12, 2010 at 9:17 AM, Erik Wright eswri...@wisc.edu wrote:
Hi Seth,
Can you recreate the example below using dbWriteTable?
Not sure if that is possible with the current dbWriteTable code (don't
have time to explore that right now). You are welcome to poke around.
You could wrap
-darwin9.8.0
The mac binary package is intended to work with the R binary installer
for OS X. So if you want to use it, you need to install R that way.
Hope that helps some.
+ seth
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)
checkEquals(10, nrow(a))
a - dbGetQuery(db, select * from t1)
checkEquals(10, nrow(a))
checkEquals(2, ncol(a))
checkEquals(z, sapply(a$data, rawToChar))
dbDisconnect(db)
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__
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On Sun, Jul 11, 2010 at 4:25 PM, David Ruau dr...@stanford.edu wrote:
Hi Seth,
Thanks for the answer.
I have install R using macport (since many years now). It compile R from
source using gcc 4.4 by default. But I don't think this is the problem
because I manage to install many other
Hi,
I am working with a function that makes use of glm.fit. Without modifying
the somewhat long code too much, I would like to have t-values returned for
the predictor variables used in the fitting process. Is there a relatively
straightforward way to do this? Thanks, Seth Myers
--
View
Sorry to bother everyone. Soon after posting my question I found out what
summary.glm() will do to a glm.fit object. Gotta love having your learning
curve exposed in public :) Seth
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Thanks! Works like a charm. -Seth
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(x) would
return a summary of the data frame?
I am considering this because I need to compare many data frames within 2
nested for loops. In the first iteration of the loop I could concatenate x
and 1 and then use it to represent the data frame. I'm open to a better
solution. Thanks, Seth Myers
are working, i.e., using auto.key, key, etc.
One message I keep getting is
Error in key[[i]][[1]] - NULL : more elements supplied than there are to
replace
Any suggestions will be appreciated
--Seth
Dr. Seth W. Bigelow
Biologist, USDA-FS Pacific Southwest Research Station
1731 Research Park
Here is the code for my recent query:
The first part just sets up the data. It's the last part
titled individual depth graph where the actual graphics code comes in
Thx
--Seth
library(lattice)
setwd(c:/sethdocs/3 Light and PLAS txs/8 Figures/Fg 6 Soil wetness)
d - read.table(2007 data.txt
the SQLite header files in the
installed include directory so that RSQLite.extfuns (and other
packages wishing to provide SQLite extension functions) can use
LinkingTo. The default value of loadable.extensions is now TRUE.
+ seth
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this? Thanks!
dbGetQuery(db,
select * from sqlite_master where tbl_name = 'yourTable')
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, only values.
For details of what is supported, try reading through the examples in
help(dbSendPreparedQuery)
+ seth
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these and other changes here:
http://cran.r-project.org/web/packages/RSQLite/NEWS
+ seth
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Thanks, works beautifully and saved hours of run time. -seth
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As far as large data sets, I've just discovered readLines and writeLines
functions. I'm using it now to read in single rows, calculate things on
them, and then write a single row to a file.
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x-readLines(datin,n=1)
writeLines(x,con=datout)
Thanks,
Seth
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Thanks. I wasn't aware that scan or read.table allowed you to read in a
single line, process it, output results, and then read in the next line.
This is what I need to do because the data set is too large to hold in RAM.
I did manage to do this with readLines and overcome the space-delimiter
, but this is slowing
processing time in a loop quite a bit. Can I manually specify that this
factor variable has two levels (even though this is lying to R)?
Thanks,Seth
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value? -seth
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positive). Does anyone know if this parameter is constrained to be
positive? -seth
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? I've only seen examples for varFunc where
covariates are used.
Thanks,
Seth
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lurking panel settings?
)
Dr. Seth W. Bigelow
Biologist, USDA-FS Pacific Southwest Research Station
1731 Research Park Drive, Davis California
sbige...@fs.fed.us / ph. 530 759 1718
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Scott, I asked this same question a few years back, here's what Deepayan
wrote. I think the last hint about scales will help you
--Seth
On 5/9/07, Seth W Bigelow sbige...@fs.f... wrote:
I would like to remove the outermost box from my wireframe plots -- this
is
the box
available here:
http://cran.r-project.org/web/packages/RSQLite/NEWS
+ seth
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) # ...everything prints out
properly, like magic!
Dr. Seth W. Bigelow
Biologist, USDA-FS Pacific Southwest Research Station
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)
panel.xyplot(...)}
xyplot(y ~ x | site, d,
panel = mypanel
)
--Seth
On Thu, Mar 4, 2010 at 4:42 PM, Seth W Bigelow sbige...@fs.fed.us wrote:
I wish to create a multipanel plot (map) from several datasets (d and
q in the example below). I can condition the main
all
14 x-y points in q on panels for sites A B
Dr. Seth W. Bigelow
Biologist, USDA-FS Pacific Southwest Research Station
1731 Research Park Drive, Davis California
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Hello R experts,
I am trying to analyze this dataset and am stuck on this problem for quite
some time now.
I am using mt.rawp2adjp.
the output that came out was a matrix with two colums since I had asked it
to calculate the adjusted p values using one method.
so it has the two columns as: rawp BH
for
logistic regression? I'm drawing a blank as SE estimation in logistic
regression is not as straightforward of an affair. Thanks.-Seth Myers
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Hi,
I have been trying to find a solution to this issue, but have not been able
to so !
I am trying to use sapply on the function getSYMBOL,
an extract from the list is:
test.goP[13:14]
$`GO:050`
IEA IEA IEA IEA TAS TAS TAS
IEA
5270753 5720725 1690128
for nlme. Any legitimate work arounds?
Thanks,
Seth
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? You could also provide a
validate function that takes a data.frame and either says OK or
describes the ways in which the input does not conform.
I think the benefits you would get out of a complete S4 wrapping of
data.frame do not outweigh the complexity introduced.
+ seth
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and C code you want to use/test. This would best
allow other people to have a single version of the R package, no?
+ seth
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investigating and fixing. It should be possible to avoid such
conflicts by proper use of name spaces, but I have not looked into the
details of what's going on.
+ seth
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Hi,
Is there a code that will return the appropriate values/structure for
arguments within a function? I seem to remember a code that will return
detailed info about a function within the R console, but now can't find it
anywhere. Thanks. Seth
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Thanks! So frustrating to self-teach a new language sometimes!
Seth
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constructed another
where the response was 0,1, or 2. I got the same result. I've also tried
the same experiment with predictors that are binary and got the same
results. I've searched the help but can't find any answers. Thanks. Seth
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will likely be slower due to the multiple calls to lme. Thanks for
any advice/insight. -seth
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see how 50K obs busted it. But 64 Mb? Perhaps there is another limit
set by the lme function? -seth
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this:
R -d gdb
run
source(src/tests/Examples/base-Ex.R)
Assuming you get a crash, type bt in the gdb console and send output.
+ seth
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Seth Falcon | @sfalcon | http://userprimary.net/user
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dependencies that would be listed on that
page if there were any for this package. An example with reverse
dependencies is e.g., the IRanges package:
http://bioconductor.org/packages/2.5/bioc/html/IRanges.html
The maintainer (Seth Falcon) would know for sure if the package will
do reverse dependencies
you are using the latest R release and latest
Bioconductor and CRAN packages.
+ seth
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Seth Falcon
Bioconductor Core Team | FHCRC
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PLEASE do read the posting guide http
. Thanks. -seth
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dimension is sensible. I will see
about fixing that for the next release.
Any thoughts? Is this a bug, and are the developers of RSQLite
reading this?
A much better forum for RSQLite issues is the r-sig-db list.
+ seth
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direction on this?
Dr. Seth W. Bigelow
Biologist, USDA-FS Pacific Southwest Research Station
1731 Research Park Drive, Davis California
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, is there a good example of R code somewhere that does this that I can
reference?
Thanks, Seth Myers
PS I plan to read all the excellent books suggested in other threads, but ask
this now to help me digest this material more quickly.
[[alternative HTML version deleted
11 82 244 326 7.943691e-20
12 57 145 202 4.964509e-10
Thanks,
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Regards,
Sahil Seth
JHSPH
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the word year?
--Seth
Dr. Seth W. Bigelow
Biologist, USDA-FS Pacific Southwest Research Station
1731 Research Park Drive, Davis California
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Hi,
RSQLite 0.7-2 is available on CRAN.
Version 0.7-2
- Fixed some partial argument matching warnings. Thanks to Matthias
Burger for reporting and sending a patch.
- Added dbBuildTableDefinition to exports per user request.
+ seth
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R-packages
don't and
everything else seems to indicate that rNMR is not attached. Any thoughts?
Thanks in advance,
Seth
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particularly like to know how to
gain access to the invisible list, VALUE, containing unexpectedNA's,
illegal levels, and other information that would help me to troubleshoot
the issue.
Dr. Seth W. Bigelow
Biologist, USDA-FS Sierra Nevada Research Center
1731 Research Park Drive, Davis California
hi folks,
I need help fitting/plotting a confidence interval to a frequency
distribution
Can someone help with this?
thanks,
tsd
-Original Message-
Date: Mon Apr 06 15:08:20 MST 2009
From: r-help-requ...@r-project.org
Subject: Welcome to the R-help mailing list
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