Re: [Bibdesk-users] BibDesk for iPad?

2010-02-01 Thread Fischlin Andreas
On 29/Jan/2010, at 13:05 , Daniele Avitabile wrote:

 One of the things that I hate the most about the iPad is that  
 Apple's strategy seems to divert developer's enthusiasm and  
 resources towards iPhone OS and far away from proper operating  
 systems (Mac OS X).

Underneath it is OS X, don't throw out the baby with the bath water.  
With the iPhone OS at the surface of the API Apple simply tries to  
support and enforce consistent GUIs and distribution quality, an  
approach/strategy with many pros and cons but given the success of the  
entire Mac user interface one that has become very successful,  
including todays Windows (Microsoft copied it all, even illegally, but  
Apple lost that court case due to the outdated copyright laws of the  
80es).

Regards,
Andreas



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Re: [Bibdesk-users] BibDesk for iPad?

2010-01-29 Thread Daniele Avitabile
One of the things that I hate the most about the iPad is that Apple's
strategy seems to divert developer's enthusiasm and resources towards iPhone
OS and far away from proper operating systems (Mac OS X).

And here we are...

I have seen already this happening with other applications. Intaglio, for
instance, used to be a fantastic graphic illustrator. Its latest version
(more than one year old) has severe bugs. Instead of fixing them and
improving their great software, the developers concentrated on making an
iPhone version.

I don't want to sound negative: I would love to use iPad one day, but I just
don't think it is good enough yet.

Best.
Daniele



On Thu, Jan 28, 2010 at 1:09 PM, JiHO jo.li...@gmail.com wrote:

 On Thu, Jan 28, 2010 at 12:25, Christiaan Hofman cmhof...@gmail.com
 wrote:
  I am pretty sure that a combo of citation management, PDF management, PDF
 viewing, and PDF annotating is really not possible on a device like iPad
 (and certainly not iPhone). We came to the conclusion that this was not even
 feasible on a normal computer or laptop without compromising too much.
 There's a limited number of keyboard shortcuts and menu items that you can
 offer, and the choices for those are very different for a citation manager
 and a PDF viewer/annotator. This is the reason we went for separate apps.
 With much less interaction you're much more restricted in what you can do,
 so you need to be much more focused on a single feature, you can't work with
 menu items and keyboard shortcuts. PDF organize + viewer/annotator can be
 combined, but citation manager would be a different app. And lots of
 functions of BibDesk are really not appropriate for iPads at all.

 I think the situation on the iPad vs. a laptop/desktop computer is
 made very different by:
 - the kind of interface you have
 - the lack of file system (which, as a side note, drives me nuts: why
 is it impossible to save the PDFs I view on my iPhone through Safari?
 Anyhow, back to the point:).

 So on OS X you have menus and keyboard shortcuts as the main means of
 interaction; and those are unique but also (mostly) static for each
 app. In this situation the solution of having separate apps for each
 task and switching between them through the file system (save a file,
 open it with another app) is how you do things.

 On iPad/iPhone, there is no menu and the UI can therefore completely
 change inside the same app. Once example is the new book reader: there
 is the shelf, aimed at choosing your book; there is the reader, aimed
 at flicking through the pages; and there is the bookstore, aimed at
 buying books. All those are three completely separate tasks, with
 completely different interfaces. Essentially they are three different
 apps, but the lack of access to the file system prevents you to have a
 bookstore app which would store an eBook that you could then double
 click to file it in your library or open it in the reader. It has to
 be all integrated in one app. Whether you think this is a good thing
 or not is probably a matter of taste and proficiency with computers,
 but in any case that's the way it is.

 A BibDesk + Skim equivalent for the iPad (and I think it could even
 also work in the iPhone, UI wise) could work in a very similar way:
 - opening the app shows your library with a list of records
 - taping an item allows to edit its details (similarly to an address
 book card): author, title, but also group etc.
 - taping a PDF icon either in the list or in each items details opens
 the PDF reader/annotator
 - taping a search icon brings you to the web / a search interface
 i.e. three different apps in one.
 This, of course, is wishful thinking. I would love and definitively
 have a use for such an app but I understand that it represents a
 tremendous amount of work and that it basically means restarting from
 scratch code-wise. Given the business model of the iPhone/iPad,
 charging for it wouldn't make as much difference on it does on the
 Mac: most good apps are shareware on the iPhone while many apps are
 excellent and free on the Mac (BibDesk being a prime example).

 JiHO
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Re: [Bibdesk-users] BibDesk for iPad?

2010-01-29 Thread Jason Davies

On 29 Jan 2010, at 12:05, Daniele Avitabile wrote:

 One of the things that I hate the most about the iPad is that Apple's 
 strategy seems to divert developer's enthusiasm and resources towards iPhone 
 OS and far away from proper operating systems (Mac OS X).


on the other hand, it's making them think differently about how they do stuff 
on Mac OS X too (eg Omnifocus)...
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Re: [Bibdesk-users] BibDesk for iPad?

2010-01-28 Thread Simon Spiegel

On 28.01.2010, at 04:48, Adam R. Maxwell wrote:

 
 On Jan 27, 2010, at 7:09 PM, M. Tamer Özsu wrote:
 
 This is an interesting discussion. For me the most critical requirement is 
 to have an annotation application that uses ink. I need to be able to jot 
 down margin notes by hand rather than typing on a window. Then the 
 integration of this pdf previewer/annotator and bibdesk would be great. Some 
 method such as the one used by, for example, Papers where the pdf file can 
 be read within Papers would be good.
 
 As far as it goes, you can read PDF files page-by-page in BibDesk, if you 
 zoom in on the file icons in the lower pane, or use the Quick Look preview.  
 No annotation or fancy reading features, though.
 
 My guess is that the iPad would basically require a new application; BibDesk 
 is heavily oriented and optimized for usage on a laptop or desktop system.  
 That would require significant effort, not to mention a developer with an 
 iPad :).  It does look like a good platform for that sort of app, so it'll be 
 interesting to see what happens.  Both you and James have emphasized the 
 reading/annotating aspect, so I'm curious whether you're looking for BibDesk 
 with a viewer, or Skim with a PDF manager.

Apparently, MekenTosj is already planning an iPad version of their Papers 
application. Although I'm not really a fan of their desktop app for various 
reason, I see how useful such an app could be for the iPad. But, of course, I 
would prefer BibDesk on the iPad. ;)

Simon

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Re: [Bibdesk-users] BibDesk for iPad?

2010-01-28 Thread Christiaan Hofman

On Jan 28, 2010, at 9:53, Simon Spiegel wrote:

 
 On 28.01.2010, at 04:48, Adam R. Maxwell wrote:
 
 
 On Jan 27, 2010, at 7:09 PM, M. Tamer Özsu wrote:
 
 This is an interesting discussion. For me the most critical requirement is 
 to have an annotation application that uses ink. I need to be able to jot 
 down margin notes by hand rather than typing on a window. Then the 
 integration of this pdf previewer/annotator and bibdesk would be great. 
 Some method such as the one used by, for example, Papers where the pdf file 
 can be read within Papers would be good.
 
 As far as it goes, you can read PDF files page-by-page in BibDesk, if you 
 zoom in on the file icons in the lower pane, or use the Quick Look preview.  
 No annotation or fancy reading features, though.
 
 My guess is that the iPad would basically require a new application; BibDesk 
 is heavily oriented and optimized for usage on a laptop or desktop system.  
 That would require significant effort, not to mention a developer with an 
 iPad :).  It does look like a good platform for that sort of app, so it'll 
 be interesting to see what happens.  Both you and James have emphasized the 
 reading/annotating aspect, so I'm curious whether you're looking for BibDesk 
 with a viewer, or Skim with a PDF manager.

I think it's clear that what one wants (and should want) is something very 
different from BibDesk or Skim. BibDesk is citation manager, to help with 
organizing bibtex, while this is about reading, annotating, and organizing 
PDFs. So it's more like Skim with a PDF organizing feature. As for the code 
base, I can tell you that 90% of BibDesk and Skim are totally useless for use 
on an iPad or iPhone. Therefore we're really talking about a totally different 
and new app, that needs to be written basically from scratch. Most relevant, 
Skim and all its annotation features are heavily based on PDFKit, which is not 
available on the iPhone OS, I think the only thing that would remain is the 
(tiny) SkimNotesBase framework for accessing Skim notes. The more primitive 
Quartz framework is much harder to work with, so writing Skim's functionality 
for the iPad would be a lot more work than writing Skim for MacOSX. I think we 
all agree that it would be very nice to have all this functionality for the 
iPad. But given that, the first question should be: who will be writing a 
totally new app that would be quite a lot of work? I can assure you I won't do 
it, and I suspect Adam would say the same. So if no one would want to start 
developing, I'm afraid this discussion is rather academic.

Christiaan


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Re: [Bibdesk-users] BibDesk for iPad?

2010-01-28 Thread Simon Spiegel

On 28.01.2010, at 11:34, Christiaan Hofman wrote:

 
 On Jan 28, 2010, at 9:53, Simon Spiegel wrote:
 
 
 
 
 This is an interesting discussion. For me the most critical requirement is 
 to have an annotation application that uses ink. I need to be able to jot 
 down margin notes by hand rather than typing on a window. Then the 
 integration of this pdf previewer/annotator and bibdesk would be great. 
 Some method such as the one used by, for example, Papers where the pdf 
 file can be read within Papers would be good.
 
 As far as it goes, you can read PDF files page-by-page in BibDesk, if you 
 zoom in on the file icons in the lower pane, or use the Quick Look preview. 
  No annotation or fancy reading features, though.
 
 My guess is that the iPad would basically require a new application; 
 BibDesk is heavily oriented and optimized for usage on a laptop or desktop 
 system.  That would require significant effort, not to mention a developer 
 with an iPad :).  It does look like a good platform for that sort of app, 
 so it'll be interesting to see what happens.  Both you and James have 
 emphasized the reading/annotating aspect, so I'm curious whether you're 
 looking for BibDesk with a viewer, or Skim with a PDF manager.
 
 I think it's clear that what one wants (and should want) is something very 
 different from BibDesk or Skim. BibDesk is citation manager, to help with 
 organizing bibtex, while this is about reading, annotating, and organizing 
 PDFs. So it's more like Skim with a PDF organizing feature. As for the code 
 base, I can tell you that 90% of BibDesk and Skim are totally useless for use 
 on an iPad or iPhone. Therefore we're really talking about a totally 
 different and new app, that needs to be written basically from scratch. Most 
 relevant, Skim and all its annotation features are heavily based on PDFKit, 
 which is not available on the iPhone OS, I think the only thing that would 
 remain is the (tiny) SkimNotesBase framework for accessing Skim notes. The 
 more primitive Quartz framework is much harder to work with, so writing 
 Skim's functionality for the iPad would be a lot more work than writing Skim 
 for MacOSX. I think we all agree that it would be very nice to have all this 
 functionality for the iPad. But given that, the first question should be: who 
 will be writing a totally new app that would be quite a lot of work? I can 
 assure you I won't do it, and I suspect Adam would say the same. So if no one 
 would want to start developing, I'm afraid this discussion is rather academic.

Since most people who use BibDesk are probably academics, this is not per se a 
negative thing. ;) At least for me, I wouldn't want just a modified version of 
Skim, but also a way to edit my bibtex data on the iPad. So far, there is no 
way to do that. When there was only the iPhone there was always the argument, 
that such a small device isn't really the best way to edit your bibliographic 
data. Now with the iPad, I think this has changed. I think there really is a 
market for a bibliography app for the iPad (and Papers is not a bibliography 
app …).

Anyway, I completely understand that this needs actually someone to do it. 
Thanks for explaining how much – or better: how little – of the existing code 
could be used.

Simon

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Re: [Bibdesk-users] BibDesk for iPad?

2010-01-28 Thread Christiaan Hofman

On Jan 28, 2010, at 11:43, Simon Spiegel wrote:

 
 On 28.01.2010, at 11:34, Christiaan Hofman wrote:
 
 
 On Jan 28, 2010, at 9:53, Simon Spiegel wrote:
 
 
 
 
 This is an interesting discussion. For me the most critical requirement 
 is to have an annotation application that uses ink. I need to be able to 
 jot down margin notes by hand rather than typing on a window. Then the 
 integration of this pdf previewer/annotator and bibdesk would be great. 
 Some method such as the one used by, for example, Papers where the pdf 
 file can be read within Papers would be good.
 
 As far as it goes, you can read PDF files page-by-page in BibDesk, if you 
 zoom in on the file icons in the lower pane, or use the Quick Look 
 preview.  No annotation or fancy reading features, though.
 
 My guess is that the iPad would basically require a new application; 
 BibDesk is heavily oriented and optimized for usage on a laptop or desktop 
 system.  That would require significant effort, not to mention a developer 
 with an iPad :).  It does look like a good platform for that sort of app, 
 so it'll be interesting to see what happens.  Both you and James have 
 emphasized the reading/annotating aspect, so I'm curious whether you're 
 looking for BibDesk with a viewer, or Skim with a PDF manager.
 
 I think it's clear that what one wants (and should want) is something very 
 different from BibDesk or Skim. BibDesk is citation manager, to help with 
 organizing bibtex, while this is about reading, annotating, and organizing 
 PDFs. So it's more like Skim with a PDF organizing feature. As for the code 
 base, I can tell you that 90% of BibDesk and Skim are totally useless for 
 use on an iPad or iPhone. Therefore we're really talking about a totally 
 different and new app, that needs to be written basically from scratch. Most 
 relevant, Skim and all its annotation features are heavily based on PDFKit, 
 which is not available on the iPhone OS, I think the only thing that would 
 remain is the (tiny) SkimNotesBase framework for accessing Skim notes. The 
 more primitive Quartz framework is much harder to work with, so writing 
 Skim's functionality for the iPad would be a lot more work than writing Skim 
 for MacOSX. I think we all agree that it would be very nice to have all this 
 functionality for the iPad. But given that, the first question should be: 
 who will be writing a totally new app that would be quite a lot of work? I 
 can assure you I won't do it, and I suspect Adam would say the same. So if 
 no one would want to start developing, I'm afraid this discussion is rather 
 academic.
 
 Since most people who use BibDesk are probably academics, this is not per se 
 a negative thing. ;) At least for me, I wouldn't want just a modified version 
 of Skim, but also a way to edit my bibtex data on the iPad. So far, there is 
 no way to do that. When there was only the iPhone there was always the 
 argument, that such a small device isn't really the best way to edit your 
 bibliographic data. Now with the iPad, I think this has changed. I think 
 there really is a market for a bibliography app for the iPad (and Papers is 
 not a bibliography app …).
 
 Anyway, I completely understand that this needs actually someone to do it. 
 Thanks for explaining how much – or better: how little – of the existing code 
 could be used.
 
 Simon

I am pretty sure that a combo of citation management, PDF management, PDF 
viewing, and PDF annotating is really not possible on a device like iPad (and 
certainly not iPhone). We came to the conclusion that this was not even 
feasible on a normal computer or laptop without compromising too much. There's 
a limited number of keyboard shortcuts and menu items that you can offer, and 
the choices for those are very different for a citation manager and a PDF 
viewer/annotator. This is the reason we went for separate apps. With much less 
interaction you're much more restricted in what you can do, so you need to be 
much more focused on a single feature, you can't work with menu items and 
keyboard shortcuts. PDF organize + viewer/annotator can be combined, but 
citation manager would be a different app. And lots of functions of BibDesk are 
really not appropriate for iPads at all.

Christiaan



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Re: [Bibdesk-users] BibDesk for iPad?

2010-01-28 Thread M. Tamer Özsu
As much as I like and heavily use bibdesk, for me the critical application to 
have on the iPad is a pdf manager that allows handwriting annotation of pdf 
files -- something like the PDF Annotator on windows tablets 
(http://ograhl.com/en/pdfannotator/). If there is the integration with bibtex, 
that would be icing on the cake.

==Tamer

On Wed 27-Jan-10, at 10:48 PM, Adam R. Maxwell wrote:

 
 On Jan 27, 2010, at 7:09 PM, M. Tamer Özsu wrote:
 
 This is an interesting discussion. For me the most critical requirement is 
 to have an annotation application that uses ink. I need to be able to jot 
 down margin notes by hand rather than typing on a window. Then the 
 integration of this pdf previewer/annotator and bibdesk would be great. Some 
 method such as the one used by, for example, Papers where the pdf file can 
 be read within Papers would be good.
 
 As far as it goes, you can read PDF files page-by-page in BibDesk, if you 
 zoom in on the file icons in the lower pane, or use the Quick Look preview.  
 No annotation or fancy reading features, though.
 
 My guess is that the iPad would basically require a new application; BibDesk 
 is heavily oriented and optimized for usage on a laptop or desktop system.  
 That would require significant effort, not to mention a developer with an 
 iPad :).  It does look like a good platform for that sort of app, so it'll be 
 interesting to see what happens.  Both you and James have emphasized the 
 reading/annotating aspect, so I'm curious whether you're looking for BibDesk 
 with a viewer, or Skim with a PDF manager.
 
 -- 
 Adam

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Re: [Bibdesk-users] BibDesk for iPad?

2010-01-28 Thread Simon Spiegel

On 28.01.2010, at 12:25, Christiaan Hofman wrote:
 
 I think it's clear that what one wants (and should want) is something very 
 different from BibDesk or Skim. BibDesk is citation manager, to help with 
 organizing bibtex, while this is about reading, annotating, and organizing 
 PDFs. So it's more like Skim with a PDF organizing feature. As for the code 
 base, I can tell you that 90% of BibDesk and Skim are totally useless for 
 use on an iPad or iPhone. Therefore we're really talking about a totally 
 different and new app, that needs to be written basically from scratch. 
 Most relevant, Skim and all its annotation features are heavily based on 
 PDFKit, which is not available on the iPhone OS, I think the only thing 
 that would remain is the (tiny) SkimNotesBase framework for accessing Skim 
 notes. The more primitive Quartz framework is much harder to work with, so 
 writing Skim's functionality for the iPad would be a lot more work than 
 writing Skim for MacOSX. I think we all agree that it would be very nice to 
 have all this functionality for the iPad. But given that, the first 
 question should be: who will be writing a totally new app that would be 
 quite a lot of work? I can assure you I won't do it, and I suspect Adam 
 would say the same. So if no one would want to start developing, I'm afraid 
 this discussion is rather academic.
 
 Since most people who use BibDesk are probably academics, this is not per se 
 a negative thing. ;) At least for me, I wouldn't want just a modified 
 version of Skim, but also a way to edit my bibtex data on the iPad. So far, 
 there is no way to do that. When there was only the iPhone there was always 
 the argument, that such a small device isn't really the best way to edit 
 your bibliographic data. Now with the iPad, I think this has changed. I 
 think there really is a market for a bibliography app for the iPad (and 
 Papers is not a bibliography app …).
 
 Anyway, I completely understand that this needs actually someone to do it. 
 Thanks for explaining how much – or better: how little – of the existing 
 code could be used.
 
 Simon
 
 I am pretty sure that a combo of citation management, PDF management, PDF 
 viewing, and PDF annotating is really not possible on a device like iPad (and 
 certainly not iPhone). We came to the conclusion that this was not even 
 feasible on a normal computer or laptop without compromising too much. 
 There's a limited number of keyboard shortcuts and menu items that you can 
 offer, and the choices for those are very different for a citation manager 
 and a PDF viewer/annotator. This is the reason we went for separate apps. 
 With much less interaction you're much more restricted in what you can do, so 
 you need to be much more focused on a single feature, you can't work with 
 menu items and keyboard shortcuts. PDF organize + viewer/annotator can be 
 combined, but citation manager would be a different app. And lots of 
 functions of BibDesk are really not appropriate for iPads at all.

I'm not saying that a complete duplication is needed or even sensible for the 
iPad, but I certainly can of think of scenarios where it would make sense to 
edit your bibliographic data on your iPad. If I read a PDF with the 
hypothetical PDF viewer, I probably also want to be able to change things for 
this specific entry like keywords or marking it as read and so on. Being able 
to edit the BibTeX data certainly makes sense. Other parts of BibDesk like the 
templating and export system, the LaTeX preview or z39.50 import are probably 
much less useful. But in the end, this just means that it would need a 
completely new app, which you said right from the beginning.

Simon

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Re: [Bibdesk-users] BibDesk for iPad?

2010-01-28 Thread Jason Davies

On 28 Jan 2010, at 12:07, Simon Spiegel wrote:

 I'm not saying that a complete duplication is needed or even sensible for the 
 iPad, but I certainly can of think of scenarios where it would make sense to 
 edit your bibliographic data on your iPad.


presumably one can work with the raw text file? What sounds like the 
opportunity here is not so much BiBDesk for iPad but something like Dropbox 
allowing editing of text files.

or should one NOT edit the bib file with eg BBEdit?
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Re: [Bibdesk-users] BibDesk for iPad?

2010-01-28 Thread JiHO
On Thu, Jan 28, 2010 at 12:25, Christiaan Hofman cmhof...@gmail.com wrote:
 I am pretty sure that a combo of citation management, PDF management, PDF 
 viewing, and PDF annotating is really not possible on a device like iPad (and 
 certainly not iPhone). We came to the conclusion that this was not even 
 feasible on a normal computer or laptop without compromising too much. 
 There's a limited number of keyboard shortcuts and menu items that you can 
 offer, and the choices for those are very different for a citation manager 
 and a PDF viewer/annotator. This is the reason we went for separate apps. 
 With much less interaction you're much more restricted in what you can do, so 
 you need to be much more focused on a single feature, you can't work with 
 menu items and keyboard shortcuts. PDF organize + viewer/annotator can be 
 combined, but citation manager would be a different app. And lots of 
 functions of BibDesk are really not appropriate for iPads at all.

I think the situation on the iPad vs. a laptop/desktop computer is
made very different by:
- the kind of interface you have
- the lack of file system (which, as a side note, drives me nuts: why
is it impossible to save the PDFs I view on my iPhone through Safari?
Anyhow, back to the point:).

So on OS X you have menus and keyboard shortcuts as the main means of
interaction; and those are unique but also (mostly) static for each
app. In this situation the solution of having separate apps for each
task and switching between them through the file system (save a file,
open it with another app) is how you do things.

On iPad/iPhone, there is no menu and the UI can therefore completely
change inside the same app. Once example is the new book reader: there
is the shelf, aimed at choosing your book; there is the reader, aimed
at flicking through the pages; and there is the bookstore, aimed at
buying books. All those are three completely separate tasks, with
completely different interfaces. Essentially they are three different
apps, but the lack of access to the file system prevents you to have a
bookstore app which would store an eBook that you could then double
click to file it in your library or open it in the reader. It has to
be all integrated in one app. Whether you think this is a good thing
or not is probably a matter of taste and proficiency with computers,
but in any case that's the way it is.

A BibDesk + Skim equivalent for the iPad (and I think it could even
also work in the iPhone, UI wise) could work in a very similar way:
- opening the app shows your library with a list of records
- taping an item allows to edit its details (similarly to an address
book card): author, title, but also group etc.
- taping a PDF icon either in the list or in each items details opens
the PDF reader/annotator
- taping a search icon brings you to the web / a search interface
i.e. three different apps in one.
This, of course, is wishful thinking. I would love and definitively
have a use for such an app but I understand that it represents a
tremendous amount of work and that it basically means restarting from
scratch code-wise. Given the business model of the iPhone/iPad,
charging for it wouldn't make as much difference on it does on the
Mac: most good apps are shareware on the iPhone while many apps are
excellent and free on the Mac (BibDesk being a prime example).

JiHO
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[Bibdesk-users] BibDesk for iPad?

2010-01-27 Thread James Owen

I just wanted to open discussion on how to use the new iPad as a paper 
browser/displayer. I can imagine sitting on a couch reading and annotating 
papers with annotations included into the linked file c.f. Skim notes, or 
showing papers to other people, perhaps displaying them on a big screen, 
pointing out details on the iPad and having the highlights show up on the big 
screen. 

As the iPad will not expose the file system and no multitasking as in the 
iPhone, it would need to be possible to view PDFs without leaving BibDesk, and 
to bring linked files along onto the iPad. I can imagine an iTunes-like 
paradigm, where the PDFs are stored in some archive only accessible from within 
BibDesk. This sounds like a unification of Skim and BibDesk. 
How would touch and multitouch be useful in this scenario? Obviously it would 
be nice to flick from page to page, and zoom in on parts of a document. 

Anyone have ideas, comments?

James

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Tel:   +41 (0)22 379 3547
Fax:   +41 (0)22 379 6869
Email:  james.o...@unige.ch
WWW: http://homepage.mac.com/jhgowen/research/research.html

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Re: [Bibdesk-users] BibDesk for iPad?

2010-01-27 Thread Jonas Zimmermann
On 28 Jan 2010, at 01:11, James Owen wrote:
 
 I just wanted to open discussion on how to use the new iPad as a paper 
 browser/displayer. I can imagine sitting on a couch reading and annotating 
 papers with annotations included into the linked file c.f. Skim notes, or 
 showing papers to other people, perhaps displaying them on a big screen, 
 pointing out details on the iPad and having the highlights show up on the big 
 screen. 

[..]

 Anyone have ideas, comments?

Only this: if there was a seemless integration of BibDesk/Skim with the iPad, 
I'd buy it and pay for the app as well.

Jonas




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Re: [Bibdesk-users] BibDesk for iPad?

2010-01-27 Thread David Nicholls
Beat me to it! The iPad would be a splendid base for (an integrated?) 
Bibdesk and Skim.  There's a iPhone app called GoodReader, which manages 
PDFs quite nicely, and that will work on the iPad, but you can't 
annotate and the indexing is non-existent.  But you can see the files.

DN

James Owen wrote:
 I just wanted to open discussion on how to use the new iPad as a
 paper browser/displayer. I can imagine sitting on a couch reading and
 annotating papers with annotations included into the linked file c.f.
 Skim notes, or showing papers to other people, perhaps displaying
 them on a big screen, pointing out details on the iPad and having the
 highlights show up on the big screen.
 
 As the iPad will not expose the file system and no multitasking as in
 the iPhone, it would need to be possible to view PDFs without leaving
 BibDesk, and to bring linked files along onto the iPad. I can imagine
 an iTunes-like paradigm, where the PDFs are stored in some archive
 only accessible from within BibDesk. This sounds like a unification
 of Skim and BibDesk. How would touch and multitouch be useful in this
 scenario? Obviously it would be nice to flick from page to page, and
 zoom in on parts of a document.
 
 Anyone have ideas, comments?
 
 James
 


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Re: [Bibdesk-users] BibDesk for iPad?

2010-01-27 Thread M. Tamer Özsu
This is an interesting discussion. For me the most critical requirement is to 
have an annotation application that uses ink. I need to be able to jot down 
margin notes by hand rather than typing on a window. Then the integration of 
this pdf previewer/annotator and bibdesk would be great. Some method such as 
the one used by, for example, Papers where the pdf file can be read within 
Papers would be good.

==Tamer

On Wed 27-Jan-10, at 8:11 PM, James Owen wrote:

 
 I just wanted to open discussion on how to use the new iPad as a paper 
 browser/displayer. I can imagine sitting on a couch reading and annotating 
 papers with annotations included into the linked file c.f. Skim notes, or 
 showing papers to other people, perhaps displaying them on a big screen, 
 pointing out details on the iPad and having the highlights show up on the big 
 screen. 
 
 As the iPad will not expose the file system and no multitasking as in the 
 iPhone, it would need to be possible to view PDFs without leaving BibDesk, 
 and to bring linked files along onto the iPad. I can imagine an iTunes-like 
 paradigm, where the PDFs are stored in some archive only accessible from 
 within BibDesk. This sounds like a unification of Skim and BibDesk. 
 How would touch and multitouch be useful in this scenario? Obviously it would 
 be nice to flick from page to page, and zoom in on parts of a document. 
 
 Anyone have ideas, comments?
 
 James
 
 -- 
 Dr. James Owen
 Department of Condensed Matter Physics
 University of Geneva 24 Quai E.-Ansermet 1211 Geneva 4, Switzerland
 Tel:   +41 (0)22 379 3547
 Fax:   +41 (0)22 379 6869
 Email:  james.o...@unige.ch
 WWW: http://homepage.mac.com/jhgowen/research/research.html
 
 --
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 Bibdesk-users@lists.sourceforge.net
 https://lists.sourceforge.net/lists/listinfo/bibdesk-users
 


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Re: [Bibdesk-users] BibDesk for iPad?

2010-01-27 Thread Adam R. Maxwell

On Jan 27, 2010, at 7:09 PM, M. Tamer Özsu wrote:

 This is an interesting discussion. For me the most critical requirement is to 
 have an annotation application that uses ink. I need to be able to jot down 
 margin notes by hand rather than typing on a window. Then the integration of 
 this pdf previewer/annotator and bibdesk would be great. Some method such as 
 the one used by, for example, Papers where the pdf file can be read within 
 Papers would be good.

As far as it goes, you can read PDF files page-by-page in BibDesk, if you zoom 
in on the file icons in the lower pane, or use the Quick Look preview.  No 
annotation or fancy reading features, though.

My guess is that the iPad would basically require a new application; BibDesk is 
heavily oriented and optimized for usage on a laptop or desktop system.  That 
would require significant effort, not to mention a developer with an iPad :).  
It does look like a good platform for that sort of app, so it'll be interesting 
to see what happens.  Both you and James have emphasized the reading/annotating 
aspect, so I'm curious whether you're looking for BibDesk with a viewer, or 
Skim with a PDF manager.

-- 
Adam


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Re: [Bibdesk-users] BibDesk for iPad?

2010-01-27 Thread James Owen
 
On Thursday, January 28, 2010, at 04:48AM, Adam R. Maxwell amaxw...@mac.com 
wrote:

On Jan 27, 2010, at 7:09 PM, M. Tamer Özsu wrote:

 This is an interesting discussion. For me the most critical requirement is 
 to have an annotation application that uses ink. I need to be able to jot 
 down margin notes by hand rather than typing on a window. Then the 
 integration of this pdf previewer/annotator and bibdesk would be great. Some 
 method such as the one used by, for example, Papers where the pdf file can 
 be read within Papers would be good.


I can write quite well with  fair amount of detail with one finger on my 
iPhone, so maybe scribbled notes would be possible.
 

My guess is that the iPad would basically require a new application; BibDesk 
is heavily oriented and optimized for usage on a laptop or desktop system.  
That would require significant effort, not to mention a developer with an iPad 
:).

Well, no, as Apple will have an iPad simulator for developers, just like they 
have for the iPhone.

  It does look like a good platform for that sort of app, so it'll be 
interesting to see what happens.  Both you and James have emphasized the 
reading/annotating aspect, so I'm curious whether you're looking for BibDesk 
with a viewer, or Skim with a PDF manager.


I think the main use will be as a PDF reader and annotator. But with ability to 
search the library, create and manage groups etc.
With wifi and a browser, getting new publications from journal websites would 
also be possible, in which case it would be nice to be able to add new entries 
to a database, and then sync to a database on a computer. 
But I doubt that it will be possible to run LaTeX, or even Applescript, on the 
iPad, and no multitasking, so dragging and dropping citations to a paper will 
not be possible.  

BTW, if BibDesk had its own PDF viewer, would it be possible to make use of the 
hyperlinks for citations which are present in many PDFs?  If one of these links 
is clicked, I think it opens a journal webpage, but could it be made to search 
for that hyperlink within the BibDesk library first, and then open a local file 
first?

James

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Re: [Bibdesk-users] BibDesk for iPad?

2010-01-27 Thread Adam R. Maxwell

On Jan 27, 2010, at 9:09 PM, James Owen wrote:

 
 On Thursday, January 28, 2010, at 04:48AM, Adam R. Maxwell 
 amaxw...@mac.com wrote:
 
 My guess is that the iPad would basically require a new application; BibDesk 
 is heavily oriented and optimized for usage on a laptop or desktop system.  
 That would require significant effort, not to mention a developer with an 
 iPad :).
 
 Well, no, as Apple will have an iPad simulator for developers, just like they 
 have for the iPhone.

My understanding is that this isn't a good substitute for testing on the 
hardware; certainly from the performance standpoint, but also for the user 
experience (gestures and so forth).

 BTW, if BibDesk had its own PDF viewer, would it be possible to make use of 
 the hyperlinks for citations which are present in many PDFs?  If one of these 
 links is clicked, I think it opens a journal webpage, but could it be made to 
 search for that hyperlink within the BibDesk library first, and then open a 
 local file first?

Not unless you made BibDesk the default handler for that URL type (e.g., http), 
and you probably don't want to do that.  Interesting idea, though; I could see 
it working fairly well with DOIs.



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Re: [Bibdesk-users] BibDesk for iPad?

2010-01-27 Thread James Owen


 BTW, if BibDesk had its own PDF viewer, would it be possible to make use of 
 the hyperlinks for citations which are present in many PDFs?  If one of 
 these links is clicked, I think it opens a journal webpage, but could it be 
 made to search for that hyperlink within the BibDesk library first, and then 
 open a local file first?

Not unless you made BibDesk the default handler for that URL type (e.g., 
http), and you probably don't want to do that.  Interesting idea, though; I 
could see it working fairly well with DOIs.


Dear Adam,

I can see that would not be feasible. How about right-click on a link, and have 
a menu item, Search library for matching DOI ? Is that possible?

James

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Re: [Bibdesk-users] BibDesk for iPad?

2010-01-27 Thread Alex Montgomery-Amo
I think that it would be more like Skim than BibDesk, or rather that BibDesk 
would be like iTunes to a Skim-on-iPad, synchronizing (perhaps a subset of) 
PDFs to the iPad, with reading (but maybe not writing) of metadata, but with 
full annotation and highlighting capabilities. The advantage here would be that 
the annotations (if they used the skimnotes framework) would then be accessible 
with Skim or BibDesk. Only the .skim notes would have to be copied back!

There's a PDF-annotation app on the iPhone already (Aji annotate) that allows 
for highlighting and other markup of PDFs, but it doesn't seem to sync back the 
annotations. Apparently, the built-in PDF display in the iPhone OS doesn't give 
access to the actual text, so the Aji Reader app sends that to the iPhone along 
with the PDFs themselves. http://www.ajidev.com/reader/support/metadata.html

We did a Kindle DX trial at my institution; you could see the potential for 
something that had real power like the iPad, but it wasn't quite there. The 
killer app (as far as education goes) for the iPad would be a full PDF markup 
tool that syncs the annotations back to a bibliography manager. Then I could 
throw out my printer.

-AHM

On 2010-01-27, at 9:32 PM, Adam R. Maxwell wrote:

 
 On Jan 27, 2010, at 9:09 PM, James Owen wrote:
 
 
 On Thursday, January 28, 2010, at 04:48AM, Adam R. Maxwell 
 amaxw...@mac.com wrote:
 
 My guess is that the iPad would basically require a new application; 
 BibDesk is heavily oriented and optimized for usage on a laptop or desktop 
 system.  That would require significant effort, not to mention a developer 
 with an iPad :).
 
 Well, no, as Apple will have an iPad simulator for developers, just like 
 they have for the iPhone.
 
 My understanding is that this isn't a good substitute for testing on the 
 hardware; certainly from the performance standpoint, but also for the user 
 experience (gestures and so forth).
 
 BTW, if BibDesk had its own PDF viewer, would it be possible to make use of 
 the hyperlinks for citations which are present in many PDFs?  If one of 
 these links is clicked, I think it opens a journal webpage, but could it be 
 made to search for that hyperlink within the BibDesk library first, and then 
 open a local file first?
 
 Not unless you made BibDesk the default handler for that URL type (e.g., 
 http), and you probably don't want to do that.  Interesting idea, though; I 
 could see it working fairly well with DOIs.
 
 
 
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Re: [Bibdesk-users] BibDesk for iPad?

2010-01-27 Thread Niels Kobschaetzki
On Thu, Jan 28, 2010 at 6:32 AM, Adam R. Maxwell amaxw...@mac.com wrote:

 On Jan 27, 2010, at 9:09 PM, James Owen wrote:


 On Thursday, January 28, 2010, at 04:48AM, Adam R. Maxwell 
 amaxw...@mac.com wrote:

 My guess is that the iPad would basically require a new application; 
 BibDesk is heavily oriented and optimized for usage on a laptop or desktop 
 system.  That would require significant effort, not to mention a developer 
 with an iPad :).

 Well, no, as Apple will have an iPad simulator for developers, just like 
 they have for the iPhone.

 My understanding is that this isn't a good substitute for testing on the 
 hardware; certainly from the performance standpoint, but also for the user 
 experience (gestures and so forth).

It is not. Because the simulator runs with the performance of the host
computer and isn't really an emulator. The next problem is that not
all API-calls and all features of Cocoa is available on the iPhone OS
(what comes directly to my mind is garbage collection but there's
more) but in the simulator the stuff will just work.
And w/out a real test device you won't really see how it will work out
-- gestures and stuff.
I know developers who have all iterations of the iPhone (Classic, 3G,
3GS) for testing (well, they are making money w/ it which makes it a
different case) because it's needed because of performance
differences. Not that much of a problem with the iPad *for now* but
still.

Niels

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Re: [Bibdesk-users] BibDesk for iPad?

2010-01-27 Thread Alan Schmitt
On Thu, Jan 28, 2010 at 6:55 AM, Alex Montgomery-Amo a...@me.com wrote:
 We did a Kindle DX trial at my institution; you could see the potential for 
 something that had real power like the iPad, but it wasn't quite there. The 
 killer app (as far as education goes) for the iPad would be a full PDF markup 
 tool that syncs the annotations back to a bibliography manager. Then I could 
 throw out my printer.

I most definitely agree. I've been trying for more than a year to do
paperless reviews, relying on Skim for that. My main issue is I cannot
review papers on the go (I've given up on using my laptop on the
plane). Skim or Bibdesk would work great in this context (viewing
Bibdesk as a PDF manager).

Alan

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