Re: [ccp4bb] reversed stereo issue in coot and pymol

On 19/06/2013 6:44, jlliu liu wrote: I am sure if others have the similiar experience as me, sometimes when I launch pymol and coot, I got the reversed stereo view which is pretty annoying. I am using the ASUS VG278H LCD monitor... Thanks in advance for your advice. -- Andreas Förster

[ccp4bb] weekend puzzle

an idea of the size. http://www.msf.bio.ic.ac.uk/images/puzzle/puzzle2.png http://www.msf.bio.ic.ac.uk/images/puzzle/puzzle3.png Happy guessing! Andreas -- Andreas Förster Crystallization and Xray Facility Manager Centre for Structural Biology

Re: [ccp4bb] weekend puzzle

doesn't sit on a twofold. It might just remain undefined. Thanks anyway for all replies. Andreas On 13/09/13 17:50, Andreas Förster wrote: Dear all, a structure I'm refining is enjoying a free R factor of 18 but still suffers from mystery density that nothing in the crystallization

Re: [ccp4bb] Error with iMosflm 1.0.7 of CCP4 6.4.0 kit

the iMosflm web site, put ipmosflm in my executable directory, and this seems to fix the problem. You should get the CCP4 folks to investigate this and propagate a fix. Cheers, -- Andreas Förster Crystallization and Xray Facility Manager Centre for Structural

Re: [ccp4bb] Comparison of Water Positions across PDBs

that for further analysis and comparisons. Best wishes. Martyn -- Andreas Förster Crystallization and Xray Facility Manager Centre for Structural Biology Imperial College London

[ccp4bb] diffraction image repository

through well-thought out mask - upload any number of datasets (native, SeMet, etc) - make existence of datasets or datasets themselves public Any suggestions would be appreciated. Andreas -- Andreas Förster Crystallization and Xray Facility Manager Centre

Re: [ccp4bb] Stereo monitor

___ -- Andreas Förster Crystallization and Xray Facility Manager Centre for Structural Biology Imperial College London

Re: [ccp4bb] High Rwork/Rfree vs. Resolution

://www.cnb.csic.es/~mjvanraaij -- Andreas Förster Crystallization and X-ray Facility Manager Centre for Structural Biology Imperial College London

Re: [ccp4bb] Stereo monitors for use with Pymol and Coot

if anybody has any ideas/thoughts what could be wrong/done I would greatly appreciate any insight. Kind regards, Matic -- Andreas Förster Crystallization and X-ray Facility Manager Centre for Structural Biology Imperial College London

[ccp4bb] small molecule crystallography

to use software X to analyze data in space group P-43N would be welcome. Thanks. Andreas -- Andreas Förster Crystallization and X-ray Facility Manager Centre for Structural Biology Imperial College London

[ccp4bb] summary - small molecule crystallography

Thanks again for all the responses to my question about small-molecule crystallography. I almost regret having sent the student to the chemist. Trying this at home sounds like a fun afternoon. On the ccp4 wiki, there was already a section describing how to solve a small-molecule structure.

Re: [ccp4bb] Merging Data from Multiple Crystals

Contact James Foadi. http://diamond.ac.uk/Beamlines/Mx/I24/Staff/Foadi.html Andreas On 29/03/2014 1:21, Alexander Batyuk wrote: Dear Tassos, Do you know by chance whether BLEND is available? Best wishes, Alex

Re: [ccp4bb] PyMol and Schrodinger

would like to hear if you have had the same experience and what you think about the Schrodinger policy. Best wishes, Mirek -- Andreas Förster Crystallization and X-ray Facility Manager Centre for Structural Biology Imperial College London

Re: [ccp4bb] NEW! Try depositing X-ray data using the wwPDB deposition system

://www.facebook.com/RCSBPDB -- Andreas Förster Crystallization and X-ray Facility Manager Centre for Structural Biology Imperial College London

[ccp4bb] m_range_check error in aimless

and consequently ctruncate craps out because of no input file. This occurs with the temporary directory on NSF and local, and with one or two mtz files as input. How can I go beyond this? Andreas -- Andreas Förster Crystallization and X-ray Facility Manager

[ccp4bb] NCS on multiple conformations

Dear all, ok, never mind. I defined either peptide conformation as part of the protein it binds to and applied NCS to that. Should have thought of that before sending out the question. Andreas -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs

[ccp4bb] NCS on multiple conformations

way of dealing with this situation? Thanks. Andreas -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk

Re: [ccp4bb] Various OSes and Crystallography

Mac OSX because of Time Machine, Illustrator and crystallographic software in one happy box. XP on a Virtual Box for emergencies (SAXS, AUC and ITC programs). Though with Microsoft and Apple both pushing towards gestures, fingertip interaction and tablets, Linux will be the only option for

[ccp4bb] imosflm background definition

. Andreas -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk attachment: backgroundSpots.png

[ccp4bb] low-resolution refinement

break, but no maps are displayed. This is independent of the sharpening factor I choose (between 5 and 60). Thanks for your help. Andreas -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London

[ccp4bb] map sharpening

difference between enabling/disabling map sharpening? Cheers, Rob -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk

Re: [ccp4bb] vitrification vs freezing

you need to be 100% unambiguous. Cheers, Tim -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk

[ccp4bb] ccp4 update

/bin/update' removed ... file '/csb/soft/Linux64/share/ccp4-6.3.0/lib_exec/update' removed ... file '/csb/soft/Linux64/share/ccp4-6.3.0/lib_exec/_update' removed ... directory '/csb/soft/Linux64/share/ccp4-6.3.0/lib_exec' removed some more blah blah) -- Andreas Förster, Research

Re: [ccp4bb] ccp4 update

Ah, I see. This was part of update 10. Thank you. Andreas On 16/01/2013 2:51, Qixu Cai wrote: Dear Andreas Förster, You can use ccp4um (ccp4 update manage) to update CCP4 from command line. Best wishes, Q. Cai -- Andreas Förster, Research Associate Paul Freemont

[ccp4bb] correction to: Post Doctoral Position at Imperial College London in Structural Biology

Dear all, the recent advertisement for a postdoc position in the Freemont/Zhang labs at Imperial had a small error in the job code needed to find it online. The correct code is NS 2013 047 IL Use it at http://www3.imperial.ac.uk/employment (Job search) to apply for the position. Closing

Re: [ccp4bb] COOT running slow after upgrading to CENTOS 6.4 from 6.3

the python source code when it was running CentOS 6.3, could this be a problem? Zhijie -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk

Re: [ccp4bb] Why the name aimless

Occasionally given to losing extremities. is that a good thing? Andreas On 02/05/2013 11:10, Phil Evans wrote: Reference: Gibbons, S. (1932) Cold Comfort Farm, Longmans, London On 2 May 2013, at 11:07, Roberto Battistutta roberto.battistu...@unipd.it wrote: Hi everyone, just a

Re: [ccp4bb] Protein interface prediction tool?

Hey Karen, Pisa analyzes oligomerization interfaces. http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html Andreas karen yates wrote: Hi, I would like to find a bioinformatic tool that will allow me to predict the dimerisation interface of a protein. A structural model has been generated,

[ccp4bb] more on dimerization interface analysis

are likely to form heterooligomers. There is some experimental evidence for that. I'm grateful for suggestions. Andreas -- Andreas Förster Imperial College London https://wasatch.biochem.utah.edu/~andreas

Re: [ccp4bb] ideal bond length and bong angel

Hey Gerard, wikipedia might tell you how to angle for fishes, but I fear it falls short of teaching you how to fish for angels. Andreas Imperial College of Aquatic and Fisheries Sciences London Gerard DVD Kleywegt wrote: Can you explain the define of the bond length and bond

Re: [ccp4bb] crystallization robot

What Jan says (in brackets) is true and very important. If you go to great lengths finding the best robot, you might as well use the best plates, and the MRC plates are the best by far that I've ever used. http://www.innovadyne.com/products_iplateSD2.html Andreas Jan Lšowe wrote: Since

Re: [ccp4bb] Protein-protein docking

Hey Josiah, if you're into self-flagellation, try RosettaDock (http://www.rosettacommons.org/software/). The program is viciously obfuscated and the learning curve correspondingly steep, but once you've figured things out, it's quite powerful. Take the published protocols with a grain of

[ccp4bb] summary: sgi dials on intel mac

Juergen Bosch and Ben Eisenbraun were quick to forward my request to Dave Gohara who's at WUSTL now. Dave was equally quick in pointing out that a universal binary of the USB-to-serial driver resides on his homepage (http://smackfumaster.com) in the Software - Crystallography and EM Binaries

[ccp4bb] sgi dials on intel mac

Hey all, I've been trying to get SGI dials to work with a MacBook Pro running Leopard. I can't get my digitus USB-to-serial adaptor to work. The supplied driver is PPC only. As the chip is from Prolific, I tried the driver from sbgrid (David Gohara's work). That also seems to be PPC only. I

Re: [ccp4bb] Thermofluor experiment

Dear Kornelius, I found the idea of doing Thermofluor on membrane proteins really intriguing - for identifying the best buffer and detergent, secondary detergents, even for checking crystallization drops that stayed clear. (This latter experiment should theoretically be possible with large

Re: [ccp4bb] first week of CCP4 community wiki

Hey Kay, I'm not even sure I see a problem with reposting. All ccp4 posts are archived, and the archive is public. So, by posting to the list, you're already implicitly consenting to having your comment made public. How is this different from being included in the wiki? That said, I

Re: [ccp4bb] bash terminal freezes after quit from 'O' 11.0.5

Documents/ More Applications/ Music/ (dyn1210-244) ~: Andreas Andreas Förster wrote: Hey Raja, this might not be directly helpful, but... I remember the same problem. I had to quit the terminal after shutting down O (11.0.5, Build 070605, on OSX 5.2). When I tried to recreate

Re: [ccp4bb] upgrade coot via fink on OS X

Hey Klaus, after I installed coot 0.5 via fink for the first time, I encountered stalling during startup as well. However, this resolved itself within a minute. Startup resumed, and the next time around, everything was back to normal. Were you patient enough during startup? Andreas

Re: [ccp4bb] ccp4 install on Leopard

A few month's back, and a few moments before almost throwing my Powerbook out the window, I enabled the root account, as officially described (http://docs.info.apple.com/article.html?artnum=106290): How to enable the root user Mac OS X 10.5 or later 1. From the Finder's Go menu, choose

[ccp4bb] scala on mac osx - off topic, really

Hey all, a colleague is running ccp4 6.0.2 on a MacBook with Timid Tiger. Built-in Scala is 3.2.25. Because of a bug, he wants to upgrade Scala. Running Scala 3.3.2-beta5 or 3.2.34 (phil's binaries) fails because gcc shared libraries are missing. Here's the setup:

Re: [ccp4bb] Two off-topic questions

Do we eally have to idicule postes to the ccp4 boad because of a missing lette? If evey post with a othogaphic mistake elicited such a eaction, I doubt anyone would cae to post to the bulletin boad. Andeas Frank von Delft wrote: only tried once). Does any body have ideas about how to

Re: [ccp4bb] How many reflections for Rfree?

When we ran into reviewer complaints a while back we referred to Methods in Enzymology, 277:366-396. I can't lay my hands onto this to verify the statement, but back then it was good enough to placate the reviewer. Full QnA with reviewer: 3) Why were only 1% of the reflections included in

Re: [ccp4bb] pH gradient in Mono Q

Hey Matt, it seems to me that what you're asking for is chromatofocusing. See the official GE documentation: http://www6.gelifesciences.com/aptrix/upp00919.nsf/Content/WD:Chromatofocusin(260949098-R350) The proprietary buffers are a bit expensive, but as you found out, they're a bit

[ccp4bb] more on thermofluor

Hey there, we've been demoing real-time PCR machines for use in differential scanning fluorimetry. Stratagene's Mx3005p has been mentioned before on this list. It seems to do the job well, and there is great software support from Frank Niesen at Oxford. However, we've really come to like

[ccp4bb] interface energetics

if what I've done makes sense and if there are alternative methods for minimizing and calculating interface energies. I don't necessarily need docking algorithms as the interface is known. I just want to get an energetic description. Thank you. Andreas -- Andreas Förster, Research

Re: [ccp4bb] interface energetics

or corrections? I've only had 7 hours of sleep since Saturday. ~Steve -- Steven Darnell Univeristy of Wisconsin-Madison Madison, WI USA [EMAIL PROTECTED] -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London

Re: [ccp4bb] Progresss with Stereo 3D under Mac OS X Leopard

for everyone, but I certainly think everyone benefits from having it as an option on as many platforms as possible. So keep it legal. -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London

Re: [ccp4bb] Facebook for Neerds

of Washington Dept. of Biochemistry, K-426 1705 NE Pacific Street Seattle, WA 98195 Box 357742 Phone: +1-206-616-4510 FAX: +1-206-685-7002 Web: http://faculty.washington.edu/jbosch -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department

[ccp4bb] refinement of half molecules

was solved by MR with one molecule per au but doesn't refine. There is good density for the MR solution, but the solution shifted by 1/2 z fits the density nearly as well. -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial

Re: [ccp4bb] R pim and Rmeans

Will someone knowledgeable shed light on these issues at the ccp4 meeting next month? Thanks Andreas Frank von Delft wrote: Hi Manfred thanks a lot for your comments, since they raise some interesting points. R_pim should give the precision of the averaged measurement, hence the name.

Re: [ccp4bb] iMosflm in 6.1 under OS X

This doesn't seem to be a general phenomenon. My xquartz is still 2.3.1 after installing the latest service pack (Leopard 6). Andreas William G. Scott wrote: Please, we all need to mention this to the Apple people. This is totally unacceptable. On Dec 17, 2008, at 2:54 PM, Engin Ozkan

Re: [ccp4bb] Fwd: Twinning

Phone: +44 (0) 20 7594 3908 Fax: +44 (0) 20 7594 3906 -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London

Re: [ccp4bb] Small lines in diffraction pattern (more info)

-- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London

Re: [ccp4bb] putting in methionines for SeMet crystals

of the protein is not compromised. Any suggestions would be of great help. Thanks in advance, -- Amit Sharma, Ph.D. Research Associate, Department of Biology, University of York, YO10 5DD UK -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department

Re: [ccp4bb] To identify specific type of interaction

they are. Thanks in advance! Saraboji -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London

Re: [ccp4bb] Update X11 in macbook

in advance for all the help... Raja Connect with friends all over the world. Get Yahoo! India Messenger at http://in.messenger.yahoo.com/?wm=n/ -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London

[ccp4bb] largest distance between atoms

Hey all, is there a script out there that computes the longest extent of a molecule and determines which atoms define the 'space diagonal'. In other words, I'm looking for the two atoms in a molecule that are most distant from each other. Thanks. Andreas -- Andreas Förster

Re: [ccp4bb] SAXS EM comparison

understand that there would be a huge amount of handwaving involved, but it might help us reconcile our models. -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk

[ccp4bb] summary - SAXS EM comparison

. Andreas On 23/07/2010 11:54, Andreas Förster wrote: Dear all, the other day I obtained SAXS data from which a low-resolution structural model was calculated. The model is simpler/less complex than one of the same protein that we obtained with cryo-EM. Is there a way to estimate theoretical SAXS data

[ccp4bb] database-assisted data archive

place (some file server that's periodically backed up) and let users browse through all the collected data of the lab with minimal effort later. I doesn't seem too hard to implement this, which is why I'm asking if anyone has done so already. Thanks. Andreas -- Andreas Förster

Re: [ccp4bb] Protein sequencing service?

85kDa.Our funds are somewhat limited. Thanks in advance. Rex Palmer Birkbeck College, London RexPalmer2010.homestead.com -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http

Re: [ccp4bb] If it is a new structure?

replacement. And both structures have much different, especially in B chain. If my structure is a new one? thank you for help. -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http

[ccp4bb] image file extensions

Dear all, I'm trying to create some space on our server and want to compress all x-ray data files. I'm wondering what extensions I should search for. mccd and img come to mind easily. What other extensions are commonly used? Thanks. Andreas -- Andreas Förster, Research

[ccp4bb] image file extensions

is economizing disk space. Thanks. Andreas -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk

[ccp4bb] mutation and minimization

-- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk

[ccp4bb] mutation and minimization - SUMMARY

, but not natively on Linux - mutate and regularize geometry in coot - phenix.pdbtools from the command line (might be able to minimize only part of the model) Andreas -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial

Re: [ccp4bb] Permissions and ownerships in ccp4 6.2.0

-- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http

Re: [ccp4bb] Lion kills moleman (and all other USF programs on the Mac)

, living or dead, is purely coincidental. ** -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk

Re: [ccp4bb] ARP/wARP install on 6.2.0 RHEL 6?

the exact same install method and it works (and using the install.sh from arp_warp_7.1/ works too), so I wonder if something changed with RHEL6 that might be causing problems? Anyone have any suggestions? Thanks! Jonathan -- Andreas Förster, Research Associate Paul Freemont

Re: [ccp4bb] Fab:antigen complex crystallization!!!

for such problems which have routinely been practiced in their lab Also what is a good storage condition for the excess complex that you want to use later? I would really appreciate any suggestion,help, direction. Thanks ivan -- Andreas Förster, Research Associate Paul Freemont

Re: [ccp4bb] Installation of ccp4 on 64bit fedora core 13

, so I moved it to /path/to/ActiveTcl-8.4/bin 10. edited 1 line in ccp4.setup-bash (setenv CCP4I_TCLTK /path/to/ActiveTcl-8.4/bin/) 11. opened a new terminal window ccp4i works -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry

[ccp4bb] protein segments from pdb

to open the pdb file with PyMOL and click on the ends, but a script/command would be much quicker. Thanks. Andreas -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk

Re: [ccp4bb] protein segments from pdb

PRO 21 SER 36 THR 28 TRP 5 TYR 13 VAL 26 HEM 0 WAT 0 SUL 0 END 0 DUM 0 Other 6 HTH Martyn On Wed, 2011-08-10 at 17:24 +0100, Andreas Förster wrote: Dear all, how do you extract segments from a pdb file, so that from an input pdb file you

Re: [ccp4bb] BLT wish

/ccp4-6.2.0-c5/ccp4i/bin/loggraph line 5) -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk

[ccp4bb] more Computer encryption matters

problems are very rare, but if you run into strange behavior, don't rule out encryption as a possible cause. -Eric -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk

Re: [ccp4bb] Trying to digest PISA results

does not show anything, but the binding constant is really strong? Or vice versa, the binding is completely undetectable, but the functional assay shows something? JPK -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial

Re: [ccp4bb] Mac OSX 10.7 Lion

won't let you trash documents The operating system for the nanny state? http://www.reghardware.com/2011/09/07/apple_mac_os_x_lion_the_nanny_os/ One of the reasons why I'm sticking with Snow Lepoard for now Regards, Peter. -- Andreas Förster, Research Associate Paul Freemont

Re: [ccp4bb] Off topic: Kendrew Model

it in my dining room if I can get it in the door. Any suggestions would be appreciated. Cheers, Katherine -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk

Re: [ccp4bb] live streaming of ccp4 study weekend

, or Chrome using a Mac with OS 10.6.8. David Mueller -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

Dear Gerard, inside Germany it's apparently called German Humour. There's a Wikipedia entry for that as well. Go figure: http://en.wikipedia.org/wiki/German_humor Andreas (still living on Sunday time) On 02/04/2012 4:03, Gerard DVD Kleywegt wrote: Dear Manfred, Outside Germany, such

Re: [ccp4bb] one datum many data? [was Re: [ccp4bb] very informative - Trends in Data Fabrication]

That's pretty funny, isn't it? Andreas On 02/04/2012 6:52, Jacob Keller wrote: Sorry to beat a dead horse, but: * *Antiwitz* (/anti-joke/): A short, often absurd scene, which has the recognizable structure of a joke, but is illogical or lacking a punch-line. Example: /Two

Re: [ccp4bb] desktop models

. Thank you for your assistance. __ -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http

Re: [ccp4bb] xquartz alert

I was so looking forward to being able to report that Apple's recent 600 MB bugfix had got the jitters out of PyMOL on an external screen, but no. It still flickers like a German disco in the 90s when I ray trace. X11 2.4. should be coming out soon. There's always hope. Andreas Engin

Re: [ccp4bb] space groups not supported by Refmac5

. Perhaps this is a message from Arp/wArp? I don't know. But having recently refined several I2 structures in refmac, I can attest that it works fine in recent versions. Ethan -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry

[ccp4bb] arp/warp installation

- installed version is 5.5.0109 Checking refmac5 version number - OK if: Badly formed number. -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk

Re: [ccp4bb] arp/warp installation

On 4 Jan 2010, at 11:15, Andreas Förster wrote: Dear all, I downloaded ARP/wARP 7.1 from EMBL-Hamburg and executed ./install.sh. All tests pass up to and including refmac version check (see log below). After that, a Badly formed number in an if test. What could be the issue? The system

Re: [ccp4bb] DLS

: +48-61-8520532 Polish Academy of Sciences e-mail: wojt...@ibch.poznan.pl Noskowskiego 12/14 www: www.man.poznan.pl/~wojtekr/ 61-704 Poznan, Poland -- -- Andreas Förster, Research

Re: [ccp4bb] slow graphic in mac 10.6

glxgears, it only shows about 1400 FPS. If I open pymol, I can actually see the images are flashing. Does anyone know why? Thanks a bunch. Rui -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London

Re: [ccp4bb] slow graphic in mac 10.6

reboot of the machine... Cheers, Serge. Le 15 févr. 2010 à 10:44, Andreas Förster a écrit : Hey Rui, for what it's worth, I had a very similar problem. I upgraded a MacBook Pro to OSX SP6 and got extra-slow graphics and a wildly flickering PyMOL window - only on the laptop screen, though

Re: [ccp4bb] N-terminal sequencing

that accurately but affordably makes N-terminal sequencing ? Thanks a lot in advance to everybody. Best regards, Xavier -- -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk

[ccp4bb] rigaku micromax 007 cooling

with me? Thank you. Andreas -- Andreas Förster Crystallization and X-ray Facility Manager Centre for Structural Biology Imperial College London

Re: [ccp4bb] rigaku micromax 007 cooling

, facilities people can change things and you'd never know until it's too late... Ed -Original Message- From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Andreas Förster Sent: Thursday, July 24, 2014 10:54 AM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] rigaku micromax 007 cooling

Re: [ccp4bb] Heavy Atom Phasing

a fair bit of time on optimization already). Thanks in advance, Rhys -- Andreas Förster Crystallization and X-ray Facility Manager Centre for Structural Biology Imperial College London

Re: [ccp4bb] dynapro DLS cuvettes

of a source of these cuvettes? Protein Solution doesn't exist anymore and Wyatt no longer has these. -- Andreas Förster Crystallization and X-ray Facility Manager Centre for Structural Biology Imperial College London

Re: [ccp4bb] Lattice Translocation Disorder Correction

as described in Wang et al (2004)?. Any input or sharing will be immensely helpful. Thanks a lot, Arko -- *Arka Chakraborty* *ibmb (Institut de Biologia Molecular de Barcelona)*/ /*BARCELONA, SPAIN*/ / -- Andreas Förster Crystallization and X-ray Facility Manager

Re: [ccp4bb] is small dialysis tubes reusable??

of Biophysics National Institute of Mental Health and Neurosciences Bengaluru-29, Karnataka INDIA E-mail: manjula@gmail.com mailto:manjula@gmail.com Mobile no:+91-9538553356 http://www.nimhans.kar.nic.in/ https://www.nimhans.kar.nic.in/ -- Andreas Förster Crystallization

Re: [ccp4bb] XDS

crystallography and Nucleic acid chemistry Max Planck Institute for Biophysical Chemistry Am Fassberg 11 37077 Göttingen Germany -- Andreas Förster Crystallization and X-ray Facility Manager Centre for Structural Biology Imperial College London

[ccp4bb] frozen pellet insoluble protein

-- Andreas Förster Crystallization and X-ray Facility Manager Centre for Structural Biology Imperial College London

Re: [ccp4bb] 3 letter code

to please tell me the 3 letter code for p nitrophenyl phosphate.. -- Regards Faisal School of Life Sciences JNU -- Andreas Förster Crystallization and X-ray Facility Manager Centre for Structural Biology Imperial College London

Re: [ccp4bb] The phase problem

-Biotecnologia UNIFESP Laboratório de Biologia Estrutural Tel.: (12) 3309-9698 Rua Talim 330, Vila Nair CEP 12231-280 São José dos Campos - SP -- Andreas Förster X-ray Crystallograhpy Facility Manager Centre for Structural Biology Imperial College London

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