Dear List
What is the syntactic difference in Jmol between single and double quotes?
In Javascript they are interchangeable, but in Jmol not. When is one
needed and when the other?
Thanks for feedback.
--
All the data
On 11/23/2011 11:11 PM, Tamas Hegedus wrote:
Rolf,
The success part is not missing. The callback function is there. The
data part is missing, I do not send any data to the server, but it seems
for me that it is not a problem. Javascript recognizes that the second
'parameter' is the callback
Hi i am trying to implement the jmol in my application but when i try to
upload the molecule it show's
like FileManager.getAtomSetCollectionFromFile(/media/66881A6A881A394F/1.mol)
FileManager opening /media/66881A6A881A394F/1.mol
openFile(/media/66881A6A881A394F/1.mol): 78 ms
i am unable to
Dear all,
I am trying to use Jmol within our Wiki. I have installed the Mediawiki
extension according to the documentation, placing both the source files of
the extension and the files of Jmol in a Jmol folder within the extensions
folder of mediawiki.
Having set
On line 833 of the file Jmol.body.php remove the '' from the third parameter
of the function jmolTag()
Jaim
--
Dr Jaime Prilusky
Head Bioinformatics
RD Bioinformatics and Data Management
Department of Biological Services
Weizmann Institute of Science
76100 Rehovot – Israel
mail:
Hello Jaime
Thank you very much for your answer... On line 833, there was no at the
third parameter, but i fond some more $parser and removed the . This did
not make the applet appear, but now i can see a link if I insert a
jmolfile. Still nothing happens if the link is clicked.
Any ideas?
Take a look to your web server error log file. Sometimes PHP errors appear
there and you may learn something from that.
Look to the source of the wiki generated page to see if the structure of the
jmolApplet makes sense.
Create a really simple page with only an applet, no links nor text and
Hi,
I'm trying to represent a MEP on a plane using the charges of a Gaussian
file.
The command I use is:
isosurface color absolute -0.1 0.1 plae xz mep
but nothing gets displayed and the console says:
isosurface created with cutoff=NaN min=0.0 max=0.0; isosurface count:0
However, if I want to
Martin,
This is not an authoritative response, but I think it is correct:
Jmol needs double quotes in a few commands, like in loading multiple
files (filenames between quotes), loading a filename that contains
problematic characters, load filter, and a few others.
As far as I remember ir
Hello Rohit
1.
I have no experience in embedding Jmol within another applet or app,
but I ahev experience using the Jmol applet.
Are you aware of the Java security limitations when using the
unsigned applet? It cannot access any folder for reading files. That
might be your problem.
Hello Kilian
First, to be sure, please confirm that you are using the Jmol
Mediawiki Extension and what version it is.
Also, version of MediaWiki may be of relevance.
You mention a jmolfile tag but that is not included in v.3.3 which
is the one documented at the Jmol Wiki.
So I guess you are
Hi Jaime
Do you think that is something that needs a permanent bug fix, or is
it just a per-case solution?
El 24 Nov 2011 a las 13:34, Jaime Prilusky escribió:
On line 833 of the file Jmol.body.php remove the '' from the third
parameter of the functionjmolTag()
Dear Angel,
You are completely right in asking first more information on versions,
before suggesting solutions :-)
We are, at this time, testing the latest stable Jmol (12.2.6) with the
latest stable MediaWiki (1.17.0) and found a problem similar to what
Kilian described, so I suggested the fix
Xavier,
is it the typo in the first line? You have plae instead of plane. I have
no experience trying to map MEP onto a plane, so am not sure if it would work
otherwise.
Jonathan
On Nov 24, 2011, at 10:18 AM, jmol-users-requ...@lists.sourceforge.net wrote:
isosurface color absolute -0.1 0.1
Thanks Jonathan,
For a moment I thought it would be as simple as my typo.
But the typo is just in my email, in my tests I wrote plane.
Turkey time now :)
Xavier
On Thu, Nov 24, 2011 at 11:08 AM, Jonathan Gutow gu...@uwosh.edu wrote:
Xavier,
is it the typo in the first line? You have plae
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