Re: [R] [FORGED] Lattice barchart legend with panel.barchart

4,1), > key=simpleKey(title="Survived", text=levels(Titan$Survived), >rectangles=TRUE, points=FALSE, columns=2)) > > Paul > > On 28/07/16 09:02, Seth Bigelow wrote: > >> I have constructed a barchart that requires a panel call, but

[R] Lattice barchart legend with panel.barchart

ain these blocks with panel.barchart? -- Seth W. Bigelow, Ph.D. Assistant Scientist of Forest Ecology Joseph W. Jones Ecological Research Center Newton, GA [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRI

[R] Error: missing value where TRUE/FALSE needed

Hi, I am getting the following error: Error in if ((sum > 0 && sums1 > 0 && sums2 > 0) != NA) { : missing value where TRUE/FALSE needed I have including my code below for your review: fitness_1_data [[alternative HTML version deleted]]

[R] very long processing time

Hi, I have implemented following program in R, that reads data from the "dtm_mydata.csv". file size is 114,029 kB, saved document Term matrix. Prog. performing some calculation and writing in a file. my computer RAM is 16 GB. To execute this program its taking around 25 hours. can any

[R] Frequency count of terms only in a given column in R

i have a text file with data of the given format: white snow lived snow in snow lived place in place a place called place as place here i have to find the frequency of the terms only in the first column (i.e.) white - 1 lived- 2 in -2 a-1 called - 1 as -1 Could you please guide me how to do the

[R] function that calculates using preceding records

20,TC146,2010,1.94,NA Seth W. Bigelow [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R

Re: [R] function that calculates using preceding records

Petr, Your code works therefore I pronounce it beautiful. Many many thanks --Seth -Original Message- From: PIKAL Petr [mailto:petr.pi...@precheza.cz] Sent: Tuesday, February 10, 2015 11:23 AM To: Seth Bigelow; r-help@r-project.org Subject: RE: [R] function that calculates using

Re: [R] function that calculates using preceding records

Aha, this solution is even more elegant than that of the previous suggestion. Thanks for alerting me to the capabilities of plyr! --Seth -Original Message- From: Dennis Murphy [mailto:djmu...@gmail.com] Sent: Tuesday, February 10, 2015 2:14 PM To: Seth Bigelow Subject: Re: [R] function

[R] decreasing blank space in ggplot2 geom_area

I wish to shrink the automatically inserted blank space at either end of the x axis of my area plot, so that the colorful graphic in the center takes up more of the available space. When I use the scale_x_discrete(limits...) command to expand the displayed area, the graphic shrinks away from the

Re: [R] decreasing blank space in ggplot2 geom_area

expand works perfectly, thanks VERY much Ista! -Seth - Original Message - From: Ista Zahn To: Cc: Sent:Thu, 26 Jun 2014 14:35:19 -0400 Subject:Re: [R] decreasing blank space in ggplot2 geom_area Hi Seth, See the expand argument to ?discrete_scale Best, Ista On Thu, Jun 26, 2014

Re: [R] Data labels in R

., L-627 Livermore, CA 94550 925-423-1062 On 9/15/13 9:43 AM, Ankur Seth ankurset...@gmail.com wrote: I want to put labels a,b,c,d on the data points x-data.frame(c(1,2,3,4),c(1,4,9,16),c(a,b,c,d), as.Date(c(01-10-2013, 02-10-2013,03-10-2013,04-10-2013), %d-%m-%Y)) colnames(x)-c(x, sq

[R] Data labels in R

(data) plot(data) -- Regards, Ankur Seth [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html

Re: [R] Data labels in R

is the problem that you are trying to solve? Tell me what you want to do, not how you want to do it. On Sun, Sep 15, 2013 at 11:37 AM, Ankur Seth ankurset...@gmail.com wrote: I need to put labels in plot in R. Can someone please help? The labels are in the excel file and loaded

[R] Simple Model in R

. Is there a way to do this in R? Regards, Ankur Seth [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html

Re: [R] Simple Model in R

Thanks Rui, but this does not change the value in the new column automatically if I change the value in the data column. Any ideas? Regards, Ankur Seth On Sat, Sep 7, 2013 at 2:11 PM, Rui Barradas ruipbarra...@sapo.pt wrote: Hello, Try the following. dat - read.table(text = Date

Re: [R] Simple Model in R

Is there a way in which I can setup a model like that? Regards, Ankur Seth On Sat, Sep 7, 2013 at 4:49 PM, Rui Barradas ruipbarra...@sapo.pt wrote: Hello, It will not change the value automatically, you will have to rerun the code. Rui Barradas Em 07-09-2013 11:52, Ankur Seth escreveu

[R] peering inside functions in a package?

Let's say I would like to look inside the function corBrownian in library (ape). When I type in the function name I get the following, which is not nearly the detail that goes into this function. I am wondering how to begin cracking this function open (and others) so I can learn more about it

[R] negative correlation with corSymm in nlme or another way?

what I intended. Any input is appreciated. Seth Myers -- View this message in context: http://r.789695.n4.nabble.com/negative-correlation-with-corSymm-in-nlme-or-another-way-tp4666357.html Sent from the R help mailing list archive at Nabble.com

[R] R Regular Expressions - Metacharacters

I thought that I can use metacharacters such as \w to match word characters with one backslash. But for some reason, I need to include two backslashes. grepl(pattern='\w', x=what) Error: '\w' is an unrecognized escape in character string starting \w grepl(pattern='\\w', x=what) [1] TRUE I

[R] Comparing x-intercepts between linear regression lines

), and ANCOVA, which can test for differences in the y-intercepts. Any help would be much appreciated. Thanks, Seth [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch

[R] Remove wireframe outer box but keep ticks

(expand.grid(c(1:10), c(1:10))) z = test[,1] + test[,2] test = cbind(test, z) names(test) = c(x, y, z) require(lattice) wireframe(z ~ x*y, data = test, scales=list(arrows=F), par.settings = list(axis.line = list(col = transparent)), ) Is there a way to eliminate the box but keep the ticks? Seth W

Re: [R] Remove wireframe outer box but keep ticks

, in the software, to the outer box. I'm assembling a number of these graphs on one page, and the outer box makes the whole figure look clunky. Lattice is an incredible piece of software! but these small details can be difficult to nail down. --Seth -Original Message- From: ila...@gmail.com

Re: [R] Remove wireframe outer box but keep ticks

= test, scales=list(arrows=F,col=1), par.settings = list(axis.line = list(col = transparent)), ) Many thanks!!! --Seth This electronic message contains information generated by the USDA solely for the intended recipients. Any unauthorized interception of this message or the use or disclosure

[R] [R-pkgs] RSQLite 0.11.0

containing tables with more than 2000 columns may not be compatible with versions of SQLite compiled with default settings. - Upgrade to SQLite 3.7.9. -- Seth Falcon | @sfalcon | http://userprimary.net/ ___ R-packages mailing list r-packa...@r

[R] issue with available.packages() and download.file()

in the repository if an error is encountered when trying to read the downloaded PACKAGES.gz file. Thanks, Seth R Version: platform = i386-pc-mingw32 arch = i386 os = mingw32 system = i386, mingw32 status = Patched major = 2 minor = 13.1 year = 2011 month = 08 day = 19 svn rev = 56771 language = R

[R] optimize weights for a weighted average?

); it seems there should be a simpler method I am not finding. Anyone have a quick point to a package/function that will optimze weights in a weighted average or similarly allow a constraint of all regression coefficients sum to 1? Thanks, Seth -- View this message in context: http://r.789695.n4

[R] Accessing elements of a list

of each list mylist = list(c(1,2,3),c(cat,dog),c(x,y,z,zz)) # Create list last - sapply(mylist,length) # Make vector with list lengths last_only - mylist[[1:length(mylist)]][last] # Crash and burn trying to make new vector with last items! How do I do this last step? Dr. Seth W

Re: [R] Decimals in R/SQL

to create a new table from an existing table using SQL where the new table has the types you want. + seth -- Seth Falcon | @sfalcon | http://userprimary.net/ __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

[R] function to compare Brier scores from two models?

scores are equal from the two models. I have not been able to find an R function to do this, can someone point me to the appropriate library and function if one exists? Thanks, Seth -- View this message in context: http://r.789695.n4.nabble.com/function-to-compare-Brier-scores-from-two-models

[R] Does POSIXlt extract date components properly?

to extract the month mydate$mon [1] 3 it returns the wrong month. And mydate$year is off by about 2,000 years. Am I doing something wrong? Dr. Seth W. Bigelow Biologist, USDA-FS Pacific Southwest Research Station 1731 Research Park Drive, Davis California sbige...@fs.fed.us / ph. 530 759 1718

Re: [R] Data type problem when extract data from SQLite to R by using RSQLite

On Tue, Mar 1, 2011 at 10:06 AM, chen jia chen_1...@fisher.osu.edu wrote: Hi Seth, Thanks so much for identifying the problem and explaining everything. I think the first solution that you suggest--make sure the schema has well defined types--would work the best for me. But, I have one

Re: [R] Data type problem when extract data from SQLite to R by using RSQLite

] tools_2.11.1 -- Seth Falcon | @sfalcon | http://userprimary.net/ __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented

Re: [R] Data type problem when extract data from SQLite to R by using RSQLite

and convert if needed at the R level. - remove NA/NULL values from the db or decide on a different way of encoding them (e.g you might be able to use -1 in the db in some situation to indicate missing). Your R code would then need to map these to proper NA. Hope that helps. + seth -- Seth

[R] R implementation of S-distribution

of any R implementation of this distribution? Dr. Seth W. Bigelow Biologist, USDA-FS Pacific Southwest Research Station 1731 Research Park Drive, Davis California sbige...@fs.fed.us / ph. 530 759 1718 [[alternative HTML version deleted]] __ R

Re: [R] python-like dictionary for R

in order to write it, but haven't used it much since :-P Be sure to look at R's native environment objects which provide a hash table structure and are suitable for many uses. + seth -- Seth Falcon | @sfalcon | http://userprimary.net/ __ R-help@r

[R] how to remove grid lines from coplot graphs

coplot() usually puts grid lines in the panels it makes. To see examples, example(coplot). How can I remove those grid lines? Seth Roberts [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman

Re: [R] How to Read a Large CSV into a Database with R

Hi Abhijit, [I've cc'd R-help to keep the discussion on the list] On Tue, Nov 16, 2010 at 8:06 AM, Abhijit Dasgupta adasgu...@araastat.com wrote: Seth, I was looking for something like this too. I've a question. If you're reading the data from a connection, does R start reading the next

Re: [R] How to Read a Large CSV into a Database with R

= ) dbGetPreparedQuery(db, sql.in, bind.data = part) } }, error = function(e) { if (grepl(no lines available, conditionMessage(e))) TRUE else stop(conditionMessage(e)) }) dbCommit(db) -- Seth Falcon | @sfalcon | http://userprimary.net/ __ R

Re: [R] Doing operations by grouping variable

together in a data frame d$scaled - d$variable/(with(d,tapply(variable,group,max))) # crash and burn Dr. Seth W. Bigelow Biologist, USDA-FS Pacific Southwest Research Station 1731 Research Park Drive, Davis California bill.venab...@csiro.au 09/20/2010 06:24 PM To michael.bedw

Re: [R] Doing operations by grouping variable

Bill, I'd never heard of ave( ) before, but it works like a charm for the purpose outlined below Thanks!! Dr. Seth W. Bigelow Biologist, USDA-FS Pacific Southwest Research Station 1731 Research Park Drive, Davis California William Dunlap wdun...@tibco.com 09/21/2010 08:52 AM To Seth W

Re: [R] Doing operations by grouping variable

Aah, that is the sort of truly elegant solution I have been seeking. And it's wrapped up in a nice programming shortcut to boot (i.e., the within statement). I retract anything I may have said about tapply being clunky. Many thanks --Seth Dr. Seth W. Bigelow Biologist, USDA-FS Pacific

[R] Doing operations by grouping variable

. but that seems awkward and bulky, is there a simpler way? Dr. Seth W. Bigelow Biologist, USDA-FS Pacific Southwest Research Station 1731 Research Park Drive, Davis California [[alternative HTML version deleted]] __ R-help@r-project.org mailing

Re: [R] 64 bit RSQLite

, you typically use source packages and native code is compiled as part of the R package installation process. In this case, you don't have to worry about 32/64 bit and the right thing should happen. I'd suggest reading through the manuals that come with R for more details and suggestions. + seth

Re: [R] Limited output

dbGetQuery instead and skip dealing with the result set and fetch. Or you can call fetch again and get the next 500 rows... + seth __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R

Re: [R] 64 bit RSQLite

to obtain a 64 bit package. install.packages(RSQLite, type=source) + seth __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented

[R] specifying column names in a vector of characters and the use?

to retrieve the values for column named X1. Seth table.1-cbind(c(1,2,3,2,2),c(0,9,0,7,9),c(7,5,9,8,8)) table.1 [,1] [,2] [,3] [1,]107 [2,]295 [3,]309 [4,]278 [5,]298 table.1-data.frame(table.1) table.1 X1 X2 X3 1 1 0 7 2 2 9

Re: [R] Compress string memCompress/Decompress

On Mon, Jul 12, 2010 at 9:17 AM, Erik Wright eswri...@wisc.edu wrote: Hi Seth, Can you recreate the example below using dbWriteTable? Not sure if that is possible with the current dbWriteTable code (don't have time to explore that right now). You are welcome to poke around. You could wrap

Re: [R] RSQLite install R x86_64 fail

-darwin9.8.0 The mac binary package is intended to work with the R binary installer for OS X. So if you want to use it, you need to install R that way. Hope that helps some. + seth -- Seth Falcon | @sfalcon | http://userprimary.net/ __ R-help@r

Re: [R] Compress string memCompress/Decompress

) checkEquals(10, nrow(a)) a - dbGetQuery(db, select * from t1) checkEquals(10, nrow(a)) checkEquals(2, ncol(a)) checkEquals(z, sapply(a$data, rawToChar)) dbDisconnect(db) -- Seth Falcon | @sfalcon | http://userprimary.net/ __ R

Re: [R] RSQLite install R x86_64 fail

On Sun, Jul 11, 2010 at 4:25 PM, David Ruau dr...@stanford.edu wrote: Hi Seth, Thanks for the answer. I have install R using macport (since many years now). It compile R from source using gcc 4.4 by default. But I don't think this is the problem because I manage to install many other

[R] way to get t-values from glm.fit output?

Hi, I am working with a function that makes use of glm.fit. Without modifying the somewhat long code too much, I would like to have t-values returned for the predictor variables used in the fitting process. Is there a relatively straightforward way to do this? Thanks, Seth Myers -- View

Re: [R] way to get t-values from glm.fit output?

Sorry to bother everyone. Soon after posting my question I found out what summary.glm() will do to a glm.fit object. Gotta love having your learning curve exposed in public :) Seth -- View this message in context: http://r.789695.n4.nabble.com/way-to-get-t-values-from-glm-fit-output

Re: [R] use a data frame whose name is stored as a string variable?

Thanks! Works like a charm. -Seth -- View this message in context: http://r.789695.n4.nabble.com/use-a-data-frame-whose-name-is-stored-as-a-string-variable-tp2269095p2269732.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r

[R] use a data frame whose name is stored as a string variable?

(x) would return a summary of the data frame? I am considering this because I need to compare many data frames within 2 nested for loops. In the first iteration of the loop I could concatenate x and 1 and then use it to represent the data frame. I'm open to a better solution. Thanks, Seth Myers

[R] Lattice legend

are working, i.e., using auto.key, key, etc. One message I keep getting is Error in key[[i]][[1]] - NULL : more elements supplied than there are to replace Any suggestions will be appreciated --Seth Dr. Seth W. Bigelow Biologist, USDA-FS Pacific Southwest Research Station 1731 Research Park

Re: [R] Lattice legend

Here is the code for my recent query: The first part just sets up the data. It's the last part titled individual depth graph where the actual graphics code comes in Thx --Seth library(lattice) setwd(c:/sethdocs/3 Light and PLAS txs/8 Figures/Fg 6 Soil wetness) d - read.table(2007 data.txt

[R] [R-pkgs] New package RSQLite.extfuns and minor upgrade for RSQLite

the SQLite header files in the installed include directory so that RSQLite.extfuns (and other packages wishing to provide SQLite extension functions) can use LinkingTo. The default value of loadable.extensions is now TRUE. + seth -- Seth Falcon | @sfalcon | http://userprimary.net

Re: [R] RSQLite equivalent of .schema?

this? Thanks! dbGetQuery(db, select * from sqlite_master where tbl_name = 'yourTable') -- Seth Falcon | @sfalcon | http://userprimary.net/ __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting

Re: [R] dbSendQuery with R variables

, only values. For details of what is supported, try reading through the examples in help(dbSendPreparedQuery) + seth -- Seth Falcon | @sfalcon | http://userprimary.net/ __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help

[R] r matrix inconsistencies?

-- View this message in context: http://r.789695.n4.nabble.com/r-matrix-inconsistencies-tp2165121p2165121.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help

[R] [R-pkgs] Release announcement: RSQLite 0.9-0 now with more BLOBs

these and other changes here: http://cran.r-project.org/web/packages/RSQLite/NEWS + seth -- Seth Falcon | @sfalcon | http://userprimary.net/ ___ R-packages mailing list r-packa...@r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages

Re: [R] Odp: better way to trick data frame structure?

Thanks, works beautifully and saved hours of run time. -seth -- View this message in context: http://r.789695.n4.nabble.com/better-way-to-trick-data-frame-structure-tp2130470p2130486.html Sent from the R help mailing list archive at Nabble.com. __ R

Re: [R] Two Questions on R (call by reference and pre-compilation)

As far as large data sets, I've just discovered readLines and writeLines functions. I'm using it now to read in single rows, calculate things on them, and then write a single row to a file. -- View this message in context:

[R] readLines with space-delimiter?

:\\rforest\\prob85.txt,open=wt) x-readLines(datin,n=1) writeLines(x,con=datout) Thanks, Seth -- View this message in context: http://r.789695.n4.nabble.com/readLines-with-space-delimiter-tp2130255p2130255.html Sent from the R help mailing list archive at Nabble.com

Re: [R] readLines with space-delimiter?

Thanks. I wasn't aware that scan or read.table allowed you to read in a single line, process it, output results, and then read in the next line. This is what I need to do because the data set is too large to hold in RAM. I did manage to do this with readLines and overcome the space-delimiter

[R] better way to trick data frame structure?

, but this is slowing processing time in a loop quite a bit. Can I manually specify that this factor variable has two levels (even though this is lying to R)? Thanks,Seth -- View this message in context: http://r.789695.n4.nabble.com/better-way-to-trick-data-frame-structure-tp2130470p2130470.html Sent from

[R] how is xerror calculated in rpart?

value? -seth -- View this message in context: http://r.789695.n4.nabble.com/how-is-xerror-calculated-in-rpart-tp2076402p2076402.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch

[R] gnls for negative autocorrelation?

positive). Does anyone know if this parameter is constrained to be positive? -seth -- View this message in context: http://n4.nabble.com/gnls-for-negative-autocorrelation-tp1838023p1838023.html Sent from the R help mailing list archive at Nabble.com

[R] using varFunc in gnls to replicate Wedderburn-style variance?

? I've only seen examples for varFunc where covariates are used. Thanks, Seth -- View this message in context: http://n4.nabble.com/using-varFunc-in-gnls-to-replicate-Wedderburn-style-variance-tp1836537p1836537.html Sent from the R help mailing list archive at Nabble.com

[R] Re : Eliminate border in wireframe plot

lurking panel settings? ) Dr. Seth W. Bigelow Biologist, USDA-FS Pacific Southwest Research Station 1731 Research Park Drive, Davis California sbige...@fs.fed.us / ph. 530 759 1718 [[alternative HTML version deleted]] __ R-help@r

Re: [R] Eliminate border in wireframe plot

Scott, I asked this same question a few years back, here's what Deepayan wrote. I think the last hint about scales will help you --Seth On 5/9/07, Seth W Bigelow sbige...@fs.f... wrote: I would like to remove the outermost box from my wireframe plots -- this is the box

[R] [R-pkgs] RSQLite 0.8-4 now on CRAN

available here: http://cran.r-project.org/web/packages/RSQLite/NEWS + seth -- Seth Falcon | @sfalcon | http://userprimary.net/ ___ R-packages mailing list r-packa...@r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages

Re: [R] conditioning variable in panel.xyplot?

) # ...everything prints out properly, like magic! Dr. Seth W. Bigelow Biologist, USDA-FS Pacific Southwest Research Station [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help

Re: [R] conditioning variable in panel.xyplot?

) panel.xyplot(...)} xyplot(y ~ x | site, d, panel = mypanel ) --Seth On Thu, Mar 4, 2010 at 4:42 PM, Seth W Bigelow sbige...@fs.fed.us wrote: I wish to create a multipanel plot (map) from several datasets (d and q in the example below). I can condition the main

[R] conditioning variable in panel.xyplot?

all 14 x-y points in q on panels for sites A B Dr. Seth W. Bigelow Biologist, USDA-FS Pacific Southwest Research Station 1731 Research Park Drive, Davis California [[alternative HTML version deleted]] __ R-help@r-project.org mailing list

[R] Help with multtest (rawp2adjp)

Hello R experts, I am trying to analyze this dataset and am stuck on this problem for quite some time now. I am using mt.rawp2adjp. the output that came out was a matrix with two colums since I had asked it to calculate the adjusted p values using one method. so it has the two columns as: rawp BH

[R] effective sample size in logistic regression w/spat autocorr

for logistic regression? I'm drawing a blank as SE estimation in logistic regression is not as straightforward of an affair. Thanks.-Seth Myers -- View this message in context: http://n4.nabble.com/effective-sample-size-in-logistic-regression-w-spat-autocorr-tp1563246p1563246.html Sent from

[R] Using getSYMBOL, annotate package on a list with empty elements.

Hi, I have been trying to find a solution to this issue, but have not been able to so ! I am trying to use sapply on the function getSYMBOL, an extract from the list is: test.goP[13:14] $`GO:050` IEA IEA IEA IEA TAS TAS TAS IEA 5270753 5720725 1690128

[R] nlme w/no groups and spatially correlated residuals

for nlme. Any legitimate work arounds? Thanks, Seth -- View this message in context: http://n4.nabble.com/nlme-w-no-groups-and-spatially-correlated-residuals-tp1477982p1477982.html Sent from the R help mailing list archive at Nabble.com. __ R-help

Re: [R] using setMethod or setGeneric to change S4 accessor symbol from @ to $

? You could also provide a validate function that takes a data.frame and either says OK or describes the ways in which the input does not conform. I think the benefits you would get out of a complete S4 wrapping of data.frame do not outweigh the complexity introduced. + seth -- Seth Falcon

Re: [R] shared object location

and C code you want to use/test. This would best allow other people to have a single version of the R package, no? + seth -- Seth Falcon | @sfalcon | http://userprimary.net/user __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman

Re: [R] [Fwd: Re: question on sqldf syntax]

investigating and fixing. It should be possible to avoid such conflicts by proper use of name spaces, but I have not looked into the details of what's going on. + seth -- Seth Falcon | @sfalcon | http://userprimary.net/user __ R-help@r-project.org

[R] finding values for arguments?

Hi, Is there a code that will return the appropriate values/structure for arguments within a function? I seem to remember a code that will return detailed info about a function within the R console, but now can't find it anywhere. Thanks. Seth -- View this message in context: http://n4

Re: [R] finding values for arguments?

Thanks! So frustrating to self-teach a new language sometimes! Seth -- View this message in context: http://n4.nabble.com/finding-values-for-arguments-tp1288978p1288988.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r

[R] tree()...binary reponse giving only one split

constructed another where the response was 0,1, or 2. I got the same result. I've also tried the same experiment with predictors that are binary and got the same results. I've searched the help but can't find any answers. Thanks. Seth -- View this message in context: http://n4.nabble.com/tree-binary

[R] (nlme, lme, glmmML, or glmmPQL)mixed effect models with large spatial data sets

will likely be slower due to the multiple calls to lme. Thanks for any advice/insight. -seth -- View this message in context: http://n4.nabble.com/nlme-lme-glmmML-or-glmmPQL-mixed-effect-models-with-large-spatial-data-sets-tp1217808p1217808.html Sent from the R help mailing list archive at Nabble.com

Re: [R] (nlme, lme, glmmML, or glmmPQL)mixed effect models with large spatial data sets

see how 50K obs busted it. But 64 Mb? Perhaps there is another limit set by the lme function? -seth -- View this message in context: http://n4.nabble.com/nlme-lme-glmmML-or-glmmPQL-mixed-effect-models-with-large-spatial-data-sets-tp1217808p1236563.html Sent from the R help mailing list archive

Re: [R] Help deciphering segfault in make check

this: R -d gdb run source(src/tests/Examples/base-Ex.R) Assuming you get a crash, type bt in the gdb console and send output. + seth -- Seth Falcon | @sfalcon | http://userprimary.net/user __ R-help@r-project.org mailing list https://stat.ethz.ch

Re: [R] R package dependencies

dependencies that would be listed on that page if there were any for this package. An example with reverse dependencies is e.g., the IRanges package: http://bioconductor.org/packages/2.5/bioc/html/IRanges.html The maintainer (Seth Falcon) would know for sure if the package will do reverse dependencies

Re: [R] Directory operations

you are using the latest R release and latest Bioconductor and CRAN packages. + seth -- Seth Falcon Bioconductor Core Team | FHCRC __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http

[R] weight by obs # in spatial 'nest' in NLME?

. Thanks. -seth -- View this message in context: http://n4.nabble.com/weight-by-obs-in-spatial-nest-in-NLME-tp1009168p1009168.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman

Re: [R] The RSQLite version of dbGetQuery drops colums

dimension is sensible. I will see about fixing that for the next release. Any thoughts? Is this a bug, and are the developers of RSQLite reading this? A much better forum for RSQLite issues is the r-sig-db list. + seth __ R-help@r-project.org mailing

[R] subsetting by groups, with conditions

direction on this? Dr. Seth W. Bigelow Biologist, USDA-FS Pacific Southwest Research Station 1731 Research Park Drive, Davis California [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r

[R] nonlinear (especially logistic) regression accounting for spatially correlated errors

, is there a good example of R code somewhere that does this that I can reference? Thanks, Seth Myers PS I plan to read all the excellent books suggested in other threads, but ask this now to help me digest this material more quickly. [[alternative HTML version deleted

[R] Help with printing fixed width

11 82 244 326 7.943691e-20 12 57 145 202 4.964509e-10 Thanks, -- Regards, Sahil Seth JHSPH [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman

[R] xyplot: Can I identify groups but not use them for regression?

the word year? --Seth Dr. Seth W. Bigelow Biologist, USDA-FS Pacific Southwest Research Station 1731 Research Park Drive, Davis California [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman

[R] [R-pkgs] New version of RSQLite on CRAN

Hi, RSQLite 0.7-2 is available on CRAN. Version 0.7-2 - Fixed some partial argument matching warnings. Thanks to Matthias Burger for reporting and sending a patch. - Added dbBuildTableDefinition to exports per user request. + seth ___ R-packages

[R] .First and loading a package in a workspace

don't and everything else seems to indicate that rNMR is not attached. Any thoughts? Thanks in advance, Seth -- View this message in context: http://www.nabble.com/.First-and-loading-a-package-in-a-workspace-tp23431418p23431418.html Sent from the R help mailing list archive at Nabble.com

[R] illegal levels in yaImpute() / AsciiGridImpute()

particularly like to know how to gain access to the invisible list, VALUE, containing unexpectedNA's, illegal levels, and other information that would help me to troubleshoot the issue. Dr. Seth W. Bigelow Biologist, USDA-FS Sierra Nevada Research Center 1731 Research Park Drive, Davis California

[R] Confidence interval?

hi folks, I need help fitting/plotting a confidence interval to a frequency distribution Can someone help with this? thanks, tsd -Original Message- Date: Mon Apr 06 15:08:20 MST 2009 From: r-help-requ...@r-project.org Subject: Welcome to the R-help mailing list To:

  1   2   >