Re: [R-SIG-Mac] path expansion

2005-08-30 Thread Simon Urbanek
On Aug 30, 2005, at 9:14 PM, Kasper Daniel Hansen wrote: I have source compile my own version of R on MacOS Tiger. I have a problem with path.expand and dirname. On Linux and the binary version of R path.expand(~/foo/) exapnds to something like /Users/kdh/foo On my homebuild I just

Re: [R-SIG-Mac] vecLib and building R from source

2005-09-01 Thread Simon Urbanek
On Sep 1, 2005, at 7:13 PM, Kjell Konis wrote: On 31 Aug 2005, at 20:33, Simon Urbanek wrote: You should definitely use Apple's compiler, stock GNU gcc is NOT the same as Apple, because there are many features that Apple folks have added. You should check out the Apple branch from GNU

Re: [R-SIG-Mac] R 2.1.1 available in DarwinPorts

2005-09-08 Thread Simon Urbanek
On Sep 8, 2005, at 12:02 AM, Jan de Leeuw wrote: I assume the fsf gfortran patches do not wind up in the apple cvs branch, unless apple explicitly puts them there. I am also interested if the patched gfortran works with vecLib and supports its complex blas. As of complex blas, there is a

Re: [R-SIG-Mac] g77 and tcl/tk

2005-10-21 Thread Simon Urbanek
On Oct 20, 2005, at 4:26 PM, Federico Calboli wrote: Hi All, I just installed the new R-2.2.0 form the dmg on CRAN, after trashing the previous R.app and the R.Framework. I already have g77 and a tcl/tk from a previous R installation (R 2.1.1). Should I remove them (how?) and reinstall

Re: [R-SIG-Mac] R.app bundle keys

2005-10-26 Thread Simon Urbanek
Paul, On Oct 26, 2005, at 8:27 AM, Paul Roebuck wrote: Suggest adding the following required application key in 'Info.plist' immediately prior to CFBundleVersion. It is already present in the localized Info.plist. I agree that it may be unnecessary, as we currently don't localize it, but it

Re: [R-SIG-Mac] RMySQL problem

2005-10-28 Thread Simon Urbanek
On Oct 27, 2005, at 9:41 PM, Parlamis Franklin wrote: Thanks for reply, Simon. This is what I got when I executed the 'ranlib' command you suggested. ranlib: file: /usr/local/mysql/lib/libmysqlclient.a(my_pthread.o) has no symbols ... This is normal and irrelevant - those are just

Re: [R-SIG-Mac] R-app crashes when saving quartz graphics to pdf

2005-10-28 Thread Simon Urbanek
Denis, On Oct 28, 2005, at 4:59 PM, Denis Chabot wrote: Hi, today I repeatedly crashed R-app when trying to save a quartz windows. I deleted my org.R-project.R.plist file but it did not help. Can you send us, please, a reproducible example (i.e. the R code you used)? From the crash log it

Re: [R-SIG-Mac] help with building a binary package?

2005-10-31 Thread Simon Urbanek
Ben, On Oct 31, 2005, at 2:33 PM, Ben Bolker wrote: I have a package with some C code that I'd like to build a binary of (for a user who is far away and I don't want to put through the trauma of getting all the compilation tools etc. etc. etc. set up).Can anyone help out if I

Re: [R-SIG-Mac] Crashing 2.2

2005-11-08 Thread Simon Urbanek
Tim, On Nov 8, 2005, at 11:08 AM, Tim Cole wrote: If I do a trellis plot and then expand the quartz window, the window redraws but R then crashes. I won't post the crash log but can send it. I cannot reproduce the error. Please send us a reproducible code. If you can't reproduce it,

Re: [R-SIG-Mac] R crashes when resizing graphic window with green button

2005-11-10 Thread Simon Urbanek
Karl, Bill, thanks for the report. I'm trying to track it down (which it harder than it seemes, because it's crashing inside Cocoa while R is idle and doing nothing). Thanks, Simon On Nov 10, 2005, at 7:33 AM, Bill Rising wrote: On Nov 9, 2005, at 9:56, Karl Thomaseth wrote: Dear all

Re: [R-SIG-Mac] Memory error

2005-11-28 Thread Simon Urbanek
On Nov 27, 2005, at 4:37 PM, Alan Olav Bergland wrote: When I attempt to run a rather hefty lme model, I get the following error message: clinal7.lme-lme(ovn~tlc+geno+log(food), clinal, random=~tlc+geno +log(food)|block/lat) Error in logLik.lmeStructInt(lmeSt, lmePars) : Calloc

Re: [R-SIG-Mac] GDD installation

2005-12-01 Thread Simon Urbanek
Richard, before I go into details, do you have a specific reason for recompiling GDD yourself? It is available in binary form on CRAN, so all you have to do is to say install.packages(GDD) and it works out of the box (R 2.2.0). On Dec 1, 2005, at 5:58 AM, richard mendes wrote: checking

Re: [R-SIG-Mac] FIXED - Error compiling gnlm package from source -FIXED

2005-12-01 Thread Simon Urbanek
John, just a side note: On Dec 1, 2005, at 4:40 AM, John Vaul wrote: I have now managed to get the gnlm package installed from source. Possibly you may want to notify the package maintainer that his package is broken by not using all necessary linker flags from R. If you compile an R

Re: [R-SIG-Mac] Crash when trying to save Quartz window as PDF

2005-12-01 Thread Simon Urbanek
On Nov 30, 2005, at 7:13 PM, Xochitl Morgan wrote: My R (Version 2.2.0) has been crashing quite reliably when I try to save my Quartz window of graphs as a PDF. If it makes any difference, my OS is 10.4.3. Can you, please, test a more recent version of the R.app GUI? Preferably the

Re: [R-SIG-Mac] R with PHP on mac

2005-12-01 Thread Simon Urbanek
Yannick, On Nov 27, 2005, at 12:15 PM, Yannick Huot wrote: My understanding is that the bitmap function will not work on OS X, because it has to be used with X11 or the GUI interface of R. That is true, although you can run a virtual X11 server (Xvfb supplied with Apple's X11). We thus

Re: [R-SIG-Mac] R logo icon

2005-12-03 Thread Simon Urbanek
Hi Federico, On Dec 3, 2005, at 5:48 PM, Federico Calboli wrote: I just produced a new R logo icon. It's almost exactly the same as the one supplied by the R.app, but the resloution is better. I downloaded the R logo as a PNG file from the R developer site and worked from there with PS

Re: [R-SIG-Mac] RMySQL and '_fprintf$LDBLStub' symbol not found

2005-12-03 Thread Simon Urbanek
Paul, can you, please, supply us with some critical details such as how you installed and/or compiled RMySQL and whether you have a custom or CRAN version of R? Thanks, Simon On Dec 3, 2005, at 5:14 PM, Paul Shannon wrote: Hi all, From a goggle search, it appears this problem is not

Re: [R-SIG-Mac] console fonts

2005-12-05 Thread Simon Urbanek
Sam, On Nov 29, 2005, at 9:29 AM, Kemp S E ((Comp)) wrote: I am having trouble changing the font style in the R GUI console. I want to change it to Courier, but everytime I try to do so it just changes back to Monaco on the next line. R.app currently provides no customization of the

Re: [R-SIG-Mac] Fwd: Crash when trying to save Quartz window as PDF

2005-12-06 Thread Simon Urbanek
Thank you for the details! On Dec 1, 2005, at 2:47 PM, Xochitl Morgan wrote: Ok. I tested with the R.app GUI (R-GUI-Debug) from the web page you mentioned. I used the one under Built for R 2.2.x because the one for 2.3.x didn't work with my R and I didn't see an R 2.3 at

Re: [R-SIG-Mac] please recommend an editor

2005-12-06 Thread Simon Urbanek
Kevin, On Dec 5, 2005, at 5:07 PM, Hai Lin wrote: I am using R in Mac OS 10.3.8 and I am trying to find an editor which is compatible with R in Mac. I recently bumped into Xcode for a few times in Mac when I directly opened scripts. Would Xcode be a good editor to learn? Are there a

Re: [R-SIG-Mac] please recommend an editor (Hai Lin)

2005-12-11 Thread Simon Urbanek
On Dec 7, 2005, at 6:58 AM, Bill Rising wrote: On Dec 6, 2005, at 6:42, Ken Beath wrote: I use TextWrangler http://www.barebones.com as a general editor. It's free and fairly powerful. I haven't set up any integration with R, but this should be possible if someone wants to do some work, as

Re: [R-SIG-Mac] please recommend an editor

2005-12-11 Thread Simon Urbanek
On Dec 7, 2005, at 8:06 AM, Jan de Leeuw wrote: This is a really important feature but BBEdit and Alpha also support it (option-click-drag) Good to know - we could build it into the integrated Mac GUI editor as well - any other wishes? The Xmas shall be jolly, so I could put in a feature

Re: [R-SIG-Mac] please recommend an editor

2005-12-11 Thread Simon Urbanek
On Dec 8, 2005, at 5:21 AM, Parlamis Franklin wrote: since this topic is pretty popular, let me mention a problem i have found with the integrated editor from R.app: the undo typing command seems to remove an arbitrary number of keystrokes. at times, i will make a mistake, then when i go

Re: [R-SIG-Mac] Mac code editing

2005-12-11 Thread Simon Urbanek
On Dec 7, 2005, at 9:04 AM, Joel Bremson wrote: There are a lot of options for editing. Any Emacs version takes time, but it's probably worth it if you do a lot of work in R. Another option is jedit, an open source editor written in java. It has an R mode you can download for it. Last

Re: [R-SIG-Mac] R 2.2 crash

2005-12-15 Thread Simon Urbanek
Tracy, On Dec 6, 2005, at 3:22 PM, Tracy Lightcap wrote: I have installed R2.2 (R Cocoa GUI 1.13 (1915)) on my BW 350 Powermac (640MB) running OS 10.3.8. The program crashes on boot. You may want to update your system - it is outdated. The CRAN version of R is compiled on 10.3.9 which is

Re: [R-SIG-Mac] Deleting packages from R

2005-12-19 Thread Simon Urbanek
Kate, On Dec 19, 2005, at 5:47 PM, Kate wrote: I down loaded and installed a windows binary instead of a mac package. I can't remove the windows package from my package manager, and I can't find any info. re how to do this. The mac version of the package doesn't seem to want to install

Re: [R-SIG-Mac] Timezone not working?

2005-12-28 Thread Simon Urbanek
Tim, On Dec 20, 2005, at 2:55 PM, Timothy Bates wrote: Hi there, This is pretty trivial: Sys.time()-- 2005-11-09 03:18:32 GMT Sys.timezone() -- 'Sys.timezone' returns an OS-specific character string, possibly an empty string. and it's as simple as

Re: [R-SIG-Mac] look for difference b/w files

2005-12-30 Thread Simon Urbanek
Kevin, On Dec 29, 2005, at 3:45 PM, Hai Lin wrote: I am using Mac OX 10.3 and I have Emacs+ESS installed. I try to find difference b/w two script files. I appreciate it if you could kindly tell me how do I achieve it, either by some kind of Mac applications or command in R. I did

Re: [R-SIG-Mac] native binary for macintel machine

2006-01-03 Thread Simon Urbanek
On Jan 3, 2006, at 4:21 PM, Jan de Leeuw wrote: I have NOT been able to compile a native gfortran from the apple cvs (low priority for apple) and i have NOT been able to build R using the intel C and fortran compilers (mostly configure problems). I was struggling with gfortran on the

Re: [R-SIG-Mac] OS X, ROBDC Excel

2006-01-09 Thread Simon Urbanek
On Jan 9, 2006, at 3:44 AM, Kyösti Kurikka wrote: Hi! In Windows it is possible to import data from Excel sheet using odbcConnectExcel()-function in [...] If this is the case, what should I use as the connection-argument? Does OS X provide the ODBC-drivers (I am running 10.3.9 with the

Re: [R-SIG-Mac] [MacOS] C++ compilation on macos

2006-01-09 Thread Simon Urbanek
Sean, you seem to have conflicting compilers in your system. You have some compiler (g77? gfortran?) in /usr/local that conflicts with system compilers. You should remove the offending compiler, otherwise you won't be able to compile any packages at all. More precisely you cannot use

Re: [R-SIG-Mac] paste data into R

2006-01-09 Thread Simon Urbanek
Sylvain, On Jan 9, 2006, at 5:46 PM, Sylvain Charlat wrote: Does anybody know how to copy / paste data from Excel to R? If I type the following: read.table(file(clipboard)) or read.delim(file(clipboard)) I get an error message: Error in open.connection(file, r) : X11 module cannot

Re: [R-SIG-Mac] paste data into R

2006-01-10 Thread Simon Urbanek
On Jan 10, 2006, at 3:27 AM, Andrew Beckerman wrote: Sylvain/Simon - Is it worth pointing out that read.csv(path/to/file.csv) will read the excel data in directly (as a saved as a csv file that is), without resorting to the clipboard and copy/paste mode? Well I would think that such

Re: [R-SIG-Mac] R.app crash report

2006-01-12 Thread Simon Urbanek
David, On Jan 12, 2006, at 4:30 AM, David Jarvis wrote: Installed R.app on powerbook 12 G4 Crashed on launching Console.log reads: Mac OS X Version 10.3.5 (Build 7M34) Your OS is outdated, you need 10.3.9, so please update your system. (BTW: This was asked and answered on this list

Re: [R-SIG-Mac] RMySQL and MySQL 5.0

2006-01-14 Thread Simon Urbanek
On Jan 13, 2006, at 12:30 PM, Christopher Fonnesbeck wrote: On Jan 13, 2006, at 12:22 PM, Simon Urbanek wrote: I didn't test MySQL, but AFAIR this problem is caused by compiler mismatch (it started with Xcode 2.2 I believe). Did you run sudo gcc_select 3.3 before compiling? The real

[R-SIG-Mac] Fwd: Can't load Matrix 0.995-1 for lme4

2006-01-19 Thread Simon Urbanek
Hank, you're right. Strangely enough, exactly this bug was fixed in one of the previous releases of Matrix, but apparently crept back in (hence the CC to the maintainers - it is in 0.995-2, too). The patch is really simple (attached). For now I have fixed it manually and re-ran the build,

Re: [R-SIG-Mac] New intel based laptops

2006-01-19 Thread Simon Urbanek
On Jan 19, 2006, at 10:13 AM, Cox, Stephen wrote: Folks - please forgive a rather uninformed post from a poor soul who bailed out on the mac os several years ago... I am considering the purchase of a new MacBook Pro; however, I rely heavily on R for my teaching and research. I am

Re: [R-SIG-Mac] problem including jpeg png support for R-2.2.1 under OS-X on G5s

2006-01-20 Thread Simon Urbanek
On Jan 20, 2006, at 3:27 PM, Stephen Shiboski wrote: For some reason, my builds of R (OS X 10.4.4, gcc 3.3) on our G5 machines aren't picking up these libraries (as evidenced by the output of the capabilities() command), even though they exist and check out as OK in config.log. Ah, it

Re: [R-SIG-Mac] Issues with R.app, Rcmdr, and saved workspaces

2006-01-23 Thread Simon Urbanek
Dan, On Jan 23, 2006, at 2:28 AM, Putler, Dan wrote: Specifically, if you save a workspace during a session in which you have worked with Rcmdr, quit that session, start a new R session using that same workspace Yes, that is a known issue with the X11 tcltk package if you try to save

Re: [R-SIG-Mac] Error building R from source on Mac OS 10.4 Tiger

2006-01-24 Thread Simon Urbanek
On Jan 24, 2006, at 1:27 PM, Georg Otto wrote: I tried to build R 2.2.1 from source on Mac OS 10.4.3 Tiger, Darwin 8.3.0 I was proceeding like this: ./configure F77=g77 CC=/usr/bin/gcc-3.3 make You will need to run sudo gcc_select 3.3 before configuring R (and you don't need to set

Re: [R-SIG-Mac] Error loading RMySQL (was: Error building R from source)

2006-01-25 Thread Simon Urbanek
Georg, On Jan 25, 2006, at 6:24 AM, Georg Otto wrote: Simon Urbanek [EMAIL PROTECTED] writes: On Jan 24, 2006, at 1:27 PM, Georg Otto wrote: I tried to build R 2.2.1 from source on Mac OS 10.4.3 Tiger, Darwin 8.3.0 I was proceeding like this: ./configure F77=g77 CC=/usr/bin/gcc-3.3

Re: [R-SIG-Mac] New intel based laptops

2006-01-25 Thread Simon Urbanek
On Jan 20, 2006, at 7:11 AM, Kjell Konis wrote: GNU gcc and gfortran from CVS have the same problem, basically. They don't know about --bundle, so linking of packages with shared libraries fails. But at least you can build both gcc and gfortran on MacIntel from here. GNU gcc (at least

Re: [R-SIG-Mac] compiling R.app when R.Framework is in ~/Library

2006-01-26 Thread Simon Urbanek
On Jan 25, 2006, at 6:13 AM, Roberto Canteri wrote: Hi to everybody, I would like to have R.Framework in the location ~/Library because I am not anymore the admin of the laptop and I would like to be free from asking to the admin for the installation and managing of R. I' ve

Re: [R-SIG-Mac] Foreign and UTF-8 on OS X

2006-02-01 Thread Simon Urbanek
Jim, On Jan 30, 2006, at 4:16 PM, EJ Nikelski wrote: In particular, when I use the foreign package to export a dataframe to SPSS, the data file looks good, but the command file contains a mix of ASCII and UTF-8 quotation marks. For example, executing ... [...] Why am I getting a

Re: [R-SIG-Mac] compiling R.app when R.Framework is in ~/Library

2006-02-01 Thread Simon Urbanek
Roberto, On Feb 1, 2006, at 10:13 AM, Roberto Canteri wrote: please enclosed you find a .zip file with the logs (console and R.crash) Ah, it's all clear - you should choose Deployment build style when building R.app. You have built R.app with Development style which uses Zero-link,

Re: [R-SIG-Mac] crash

2006-02-01 Thread Simon Urbanek
Alan, On Feb 1, 2006, at 2:04 PM, Alan Olav Bergland wrote: There was no crash error in the Finder, The crash reports are in Console (Applications-Utilities). Please have a look there. There must be a record either in the crash log or the console log. The fact that it worked before could

Re: [R-SIG-Mac] New compilers for Xcode 2.2 (universal gfortran and gcc 4.0.3 for Intel Macs)

2006-02-10 Thread Simon Urbanek
Paul, On Feb 9, 2006, at 7:28 PM, Paul Roebuck wrote: My reading of that page implies G77 is no longer needed (or provided for that matter). Thought CRAN G77 binaries and GFORTRAN (G95) didn't mix. Is this the not yet ready for prime time developer setup or the new recommended setup

Re: [R-SIG-Mac] Plot from Emacs/Ess...

2006-02-11 Thread Simon Urbanek
Alberto, On Feb 11, 2006, at 9:34 AM, Alberto Santini wrote: I'm using R 2.2.1 from Emacs and ESS. It works fine, but when I try to plot something, nothing happens; I see again the R prompt and a file .ps is created in the working directory. This is the expected behavior - you are not

Re: [R-SIG-Mac] Fine grid lines when using image

2006-02-14 Thread Simon Urbanek
Ken, On Feb 13, 2006, at 7:08 PM, Ken Knoblauch wrote: About a year ago, I noticed that the image() function generated fine grid lines in graphics when using the quartz() device but not x11() and that these lines could be found in the pdf() generated images when viewed in some but not

Re: [R-SIG-Mac] Is this an approximation I should expect, or a sign of a problem in the Universal Binary?

2006-02-15 Thread Simon Urbanek
James, I'd say the quick answer is yes. I'm not familiar enough with the Jenkins-Traub algorithm to run a thorough numerical analysis, but when you look at the magnitude of the coefficients, the relative error is way below machine eps (which is at ca. 1e-16), hence I'd say yes to the first

Re: [R-SIG-Mac] RMySQL

2006-02-22 Thread Simon Urbanek
On Feb 22, 2006, at 9:34 AM, Jason Horn wrote: On Feb 22, 2006, at 7:59 AM, Tom Love wrote: Thanks for the suggestion. The compile fails with the error: ld: truncated or malformed archive: /usr/local/mysql/lib/ libmysqlclient.a (ranlib structures in table of contents extends past the end

Re: [R-SIG-Mac] Setting environment variables, especially http_proxy and ftp_proxy

2006-04-05 Thread Simon Urbanek
Doug, On Apr 5, 2006, at 2:35 PM, Douglas Bates wrote: I have installed the universal binary for R-2.2.1 on an Intel Mac that is behind a firewall. How do I ensure that the http_proxy environment variable is set when I start R? I understand that I must do this before the first time I

Re: [R-SIG-Mac] Setting environment variables, especially http_proxy and ftp_proxy

2006-04-07 Thread Simon Urbanek
On Apr 7, 2006, at 4:38 PM, Paul Roebuck wrote: The only problem I had with using .Renviron was that the setting for R_LIBS (which I set in that file) was not available to the command line invocations for running check and INSTALL. But even that is easily fixed as the format of

Re: [R-SIG-Mac] plier source compilation error related to dylib

2006-04-20 Thread Simon Urbanek
On Apr 20, 2006, at 12:47 PM, S Kong wrote: Hello, I was trying to install BioConductor plier package under R64 of Simon's. ( Quad G5 + 10.4.6 + Xcode 2.2.1 + powerpc-apple- darwin8-gcc-4.0.1) The plier package is an expression index calculation algorithm for Affymetrix microarray In

Re: [R-SIG-Mac] plier source compilation error related to dylib

2006-04-21 Thread Simon Urbanek
On Apr 21, 2006, at 2:43 PM, S Kong wrote: Dear Simon It seems there is the affyplier.so in the directory. I thought so - what you saw were just warnings, not errors - nothing really wrong with that. When I start R64 and try to dyn.load dyn.load(/Research/GEO_CEL/pliersrc/affyplier.so)

Re: [R-SIG-Mac] .mpkg not recognized

2006-04-27 Thread Simon Urbanek
On Apr 27, 2006, at 5:29 PM, Martin Henry H. Stevens wrote: I can't install any R binaries any more, and have always done so in the past. The problem seems to be that my Mac no longer recognizes .mpkg i.e. doesn't know how to open it. I cannot find anything called Apple Installer on my

Re: [R-SIG-Mac] .mpkg not recognized

2006-04-27 Thread Simon Urbanek
On Apr 27, 2006, at 6:02 PM, Jan de Leeuw wrote: If you don't have Installer.app in /Applications/Utilities then indeed you cannot open mpkg files. FWIW: it this case you can probably still use the command-line version. It can be used like this: sudo installer -pkg R.mpkg -target /

Re: [R-SIG-Mac] Fwd: R 2.3.0 OS X Binary

2006-04-28 Thread Simon Urbanek
On Apr 27, 2006, at 6:40 PM, Joran Elias wrote: I posted this at the R Help list, but thought it might be more relevant here. Yes, this is the correct list to post it to. Begin forwarded message: From: Joran Elias [EMAIL PROTECTED] Date: April 27, 2006 12:15:12 PM MDT To:

Re: [R-SIG-Mac] R 2.3 crashes when attempting package installation

2006-04-28 Thread Simon Urbanek
Thanks, Matt. On Apr 28, 2006, at 1:32 PM, [EMAIL PROTECTED] wrote: I am using the latest R (2.3) within Emacs/ESS on an iMac G5. When I type install.packages() within R, the program crashes, generating the following error: install.packages() --- Please select a CRAN mirror for use in

Re: [R-SIG-Mac] R.app crashed

2006-04-28 Thread Simon Urbanek
On Apr 28, 2006, at 1:43 PM, Denis Chabot wrote: I updtated to R 2.3 yesterday, along with the new version of R.app. I launched it and installed packages without problem. Today I tried to do real work. I opened a relatively large R dataset (8.9 M, over 3 rows). I then opened a work space

Re: [R-SIG-Mac] R-2.3.0 crashes under ess-5.3.0

2006-04-28 Thread Simon Urbanek
Robin, On Apr 28, 2006, at 9:09 AM, Robin Hankin wrote: [sending here after trying R-help and ess-help with no success] With R-2.3.0 (dmg downloaded just now), ess-5.3.0: trying to open an X11 graphics window with X11(octopus:0.0) results in R crashing: X11(octopus:0.0) Error:

Re: [R-SIG-Mac] Possibly fixed R GUI, please test

2006-05-02 Thread Simon Urbanek
, sometimes even killing R.app as well. Cheers, Simon On May 2, 2006, at 1:58 PM, Simon Urbanek wrote: To all users that had problems with the GUI and R 2.3.0 (error messages in the console or 'hangs' at startup), please try the current nightly build of the GUI from http

Re: [R-SIG-Mac] Missing Open in Editor icon

2006-05-05 Thread Simon Urbanek
On May 4, 2006, at 7:39 PM, Federico Calboli wrote: On 5 May 2006, at 00:27, Benilton Carvalho wrote: http://r.research.att.com/R-GUI-3114-2.3-Deployment.dmg b On Thu, 4 May 2006, Roberto Osorio wrote: After I upgraded to R 2.3.0, the Open in Editor icon in the R console toolbar

Re: [R-SIG-Mac] [Rd] R 2.3.0 and rgl on OS X 10.4.6 (PR#8833)

2006-05-05 Thread Simon Urbanek
Neely, as Duncan was saying R-SIG-Mac is a better place to discuss it. On May 4, 2006, at 2:08 PM, [EMAIL PROTECTED] wrote: I just downloaded and installed R 2.3.0 on my Mac G5 running OS X 10.4.6. I also updated with R.app revision 3114 as ecommended. Now, when I attemp to use package

Re: [R-SIG-Mac] Mac as R platform

2006-05-09 Thread Simon Urbanek
Jason, On May 5, 2006, at 12:07 PM, Jason Liao wrote: Good morning. I am considering buying a new computer to develop an R package for multi-dimensional Monte Carlo simulation. One requirement is to call, from R, a Fortran 90 program about 1000 lines of code. A C++ version of that

Re: [R-SIG-Mac] Problems with R.app GUI

2006-05-11 Thread Simon Urbanek
Bruce, On May 10, 2006, at 10:42 PM, Bruce Boucek wrote: I am experiencing the same problem/flaw in the GUI for R 2.3.0 that a few other people have posted concern about. With R-GUI-3121-2.3 Entering demo() at the prompt results in the following message: 2006-05-10 12:31:26.370

Re: [R-SIG-Mac] How to revert to older R version?

2006-05-12 Thread Simon Urbanek
On May 12, 2006, at 8:36 AM, Booman, M wrote: Hi Sean, Thanks for your reply. I managed to install most of them as source packages, but for a number of them (and of course the ones I need most) I got an error message saying that compilation failed. I have included an example at the

Re: [R-SIG-Mac] [Bioc-devel] how to create my own repository of mac os x binaries?

2006-05-16 Thread Simon Urbanek
[I'm CCing this to SIG-Mac as this may be of global interest] On May 16, 2006, at 9:25 AM, Seth Falcon wrote: stefano iacus [EMAIL PROTECTED] writes: Please, take care that the new R binary for OS X is Universal, which means you have to consider also a universal build of the packages.

Re: [R-SIG-Mac] help2man problem installing R-2.3.0 from source

2006-05-16 Thread Simon Urbanek
Michael, thanks for tracking this down, excellent work! The reason for CRAN R binary working is simply that it uses GNU readline instead of Apple's libedit (which is disguised as readline btw). A simple work-around is therefore to install GNU readline (see the R for Mac OS X FAQ for

Re: [R-SIG-Mac] Performance Issues.

2006-05-16 Thread Simon Urbanek
Byron, On May 16, 2006, at 8:34 PM, Byron Ellis wrote: Apparently somebody was having some performance issues http://sekhon.berkeley.edu/macosx/ fortunately, it got dugg and someone fixed it for us http://ridiculousfish.com/blog/archives/2006/05/16/36/ In an unsurprising turn of events

Re: [R-SIG-Mac] R-2.3.0 on mac os x 10.3?

2006-05-18 Thread Simon Urbanek
David, On May 18, 2006, at 7:02 AM, David Ruau wrote: Is it possible to install the latest version of R on 10.3.9 ? If you meant the CRAN binary, no. or i have to upgrade to Tiger? If you want to use CRAN binary, yes. You can still compile latest R for 10.3.9 yourself and there are

Re: [R-SIG-Mac] rgdal : load failure :-(

2006-05-19 Thread Simon Urbanek
On May 18, 2006, at 6:59 AM, massimosisasha wrote: hi. i've installed rgdal on R-2.2 on a osx10.4.6 but when itry to load the package i've this error message : library(rgdal) Errore in dyn.load(x, as.logical(local), as.logical(now)) : impossibile caricare libreria condivisa

Re: [R-SIG-Mac] R-GUI bugs

2006-05-21 Thread Simon Urbanek
Andrew, On May 21, 2006, at 9:14 AM, Andrew Beckerman wrote: Three issues : (I have not been able to check on another machine. all are repeatable on my machine... even after deleting the plist file) 1) when opening a script file, that file is added in the window menu. If one

Re: [R-SIG-Mac] R-GUI bugs

2006-05-21 Thread Simon Urbanek
On May 21, 2006, at 6:32 PM, Simon Urbanek wrote: Andrew, On May 21, 2006, at 9:14 AM, Andrew Beckerman wrote: 1) when opening a script file, that file is added in the window menu. If one closes that file, and reopens it later, two instances of the file are now listed in the windos

Re: [R-SIG-Mac] no subject

2006-05-22 Thread Simon Urbanek
On May 22, 2006, at 11:36 AM, Sokol Haxhinasto wrote: I am using MacOSx 10.4.6. I installed Gostats and when I try to call it, library(Gostats) it gives the following. I tried installing graph, then it said it requires Ruuid and that's when it fails. Why don't you install the required

Re: [R-SIG-Mac] labdsv installation problems

2006-05-22 Thread Simon Urbanek
Jonathan, On May 22, 2006, at 12:28 PM, Jonathan Hughes wrote: Hi Simon, Using OS 10.4.6 on a G4, I have reinstalled R2.3.0 with 3114 update but I still have the same problem when I try to install labdsv. Error message: library(labdsv) Loading required package: mgcv This is mgcv

Re: [R-SIG-Mac] R 2.3.0 and rgl on OS X 10.4.6

2006-05-23 Thread Simon Urbanek
Hans-Joerg, On May 23, 2006, at 12:12 PM, Hans-Joerg Bibiko wrote: I found this thread about R 2.3.0 and rgl on OS X 10.4.6 in the internet. I had the same problem. So why didn't you use the fix? I fixed the source code for api.cpp in that way: I only changed both lines with - void

Re: [R-SIG-Mac] Several R installation issues

2006-05-23 Thread Simon Urbanek
On May 23, 2006, at 10:16 PM, Herve Pages wrote: Thanks for the work-around. It works in the sense that after this removal, powerpc/R-2.2.1.dmg will not delete my previous installation of R 2.3.0. But after doing this, I'm still unable to launch R 2.3 from the command line:

Re: [R-SIG-Mac] Outdated links to the Bioconductor repos in R.app

2006-05-23 Thread Simon Urbanek
Herve, On May 23, 2006, at 10:31 PM, Herve Pages wrote: I'm using R.app GUI 1.16-pre (3114) with R 2.3.0. The links defined in R.app for accessing the Bioconductor repositories need to be updated. This has been fixed in 3161 (and of all the people you should know, actually ;)). but

Re: [R-SIG-Mac] Problems with edit()

2006-05-28 Thread Simon Urbanek
Bill, On May 27, 2006, at 3:29 PM, Gardner, William wrote: I am unable to get edit() to work. When I have it set the R application editor, then a command like myfunction - edit(myfunction) Does not invoke the editor for me. Which version of the GUI are you using? Including your GUI

Re: [R-SIG-Mac] grDevices won't load

2006-05-28 Thread Simon Urbanek
Steven, On May 27, 2006, at 6:54 PM, Steven McCarroll wrote: Installed R (2.4.0) on new dual-G5 Mac (OS X 10.4.4), Please be more specific as how how you installed it. I have just tested the nightly binary and it doesn't show this behavior, so I have no idea where you installed it from.

Re: [R-SIG-Mac] grDevices won't load

2006-05-28 Thread Simon Urbanek
On May 28, 2006, at 6:31 PM, Simon Urbanek wrote: On May 27, 2006, at 6:54 PM, Steven McCarroll wrote: Installed R (2.4.0) on new dual-G5 Mac (OS X 10.4.4), Please be more specific as how how you installed it. I have just tested the nightly binary and it doesn't show this behavior, so I

Re: [R-SIG-Mac] rpy on macbook

2006-06-05 Thread Simon Urbanek
Ruedi, On Jun 2, 2006, at 1:36 PM, Ruedi Fries wrote: I have successfully installed the universal binary of R-2.3.0 You may want to install R 2.3.1 instead, there were a couple of quite important bugfixes (especially in the GUI). and I'm now trying to compile rpy-0.99.2 on a Macbook

Re: [R-SIG-Mac] Window titles

2006-06-19 Thread Simon Urbanek
Paul, On Jun 17, 2006, at 8:02 AM, Paul Roebuck wrote: Is there a means to provide a title for a Quartz window? Yes, now introduced in 3244: you can specify the desired name in the call to quartz, e.g. quartz(My Precious Plot) We have never used the device name, so now we have at least some

Re: [R-SIG-Mac] Problems with package gmp

2006-06-29 Thread Simon Urbanek
On Jun 29, 2006, at 8:54 AM, Terry A. Cox wrote: I have just upgraded OS X from Panther to Tiger 10.4.7, and R from 2.2.1 to 2.3.1. I installed several packages (at system level), but gmp will not load: Please make sure you installed the latest gmp properly. I cannot reproduce the

Re: [R-SIG-Mac] Starting–R error message

2006-07-01 Thread Simon Urbanek
Roberto, On Jun 30, 2006, at 5:30 PM, Roberto Osorio wrote: I just moved from a PowerBook to a MacBook Pro and I get the following message when starting R: 2006-06-30 14:19:12.305 R[1425] *** -[NSBundle load]: Error loading code

Re: [R-SIG-Mac] binary package bundles

2006-07-03 Thread Simon Urbanek
Hi Robin, On Jul 3, 2006, at 10:06 AM, Robin Hankin wrote: The BACCO bundle, which I wrote, comprises three separate packages; none of them include any fortran or C code. The bundle passes all three checks on the check summary page. It does not pass make check on OS X:

Re: [R-SIG-Mac] Errors loading gmp library

2006-07-03 Thread Simon Urbanek
Oscar and Terry, apparently this is the second report on gmp, but unfortunately I cannot reproduce it. I have tried on multiple machines, but it works for me. Are you using the CRAN binary of R? Which version of gmp are you using? Where did you install it from? Also in case this is a

Re: [R-SIG-Mac] Errors loading gmp library

2006-07-03 Thread Simon Urbanek
Thanks, Oscar. On Jul 3, 2006, at 2:16 PM, Oscar Moreno wrote: I used the mirror at Pair Networks, Pittsburgh, PA (http:// cran.us.r-project.org/) The version for gmp is: 0.4-0 I have installed XCode Version 2.2. library(gmp) works when installed from http://R.research.att.com!! I guess

Re: [R-SIG-Mac] Compiling the nlme package on an Intel Mac

2006-07-03 Thread Simon Urbanek
On Jul 3, 2006, at 5:24 PM, Douglas Bates wrote: I enclose the 00install.out file that resulted from svn co https://svn.r-project.org/R-packages/trunk/nlme R CMD check nlme I believe I am working with a clean install of R-2.3.1 on an Intel Mac but I could have tweaked something at some

Re: [R-SIG-Mac] Error: package 'RODBC' was built for universal-apple-darwin8.6.1

2006-07-06 Thread Simon Urbanek
Randy, On Jul 5, 2006, at 11:43 AM, Randall C. Johnson [Contr] wrote: I recently installed RODBC (binary) on my G4 PowerBook, and I am not able to load the library (I thought I had it working at one point). I also tried installing from source, but I have other issues there... Any

Re: [R-SIG-Mac] Wrong architecture when using R CMD COMPILE

2006-07-07 Thread Simon Urbanek
On Jul 6, 2006, at 11:30 PM, Adam Lyon wrote: Hi, I have a Powerbook G4 and I've installed R 2.3.1. When I try to install a package that involves compilation, like ROracle, I find that R CMD COMPILE uses arch=i386 instead of ppc. Ah, yes, it's a bug, COMPILE was not adapted to support

Re: [R-SIG-Mac] ftp on new macs

2006-07-07 Thread Simon Urbanek
Thomas, On Jul 7, 2006, at 6:33 PM, Thomas Lumley wrote: On my new macbook I have had trouble sending things to CRAN by ftp. This message is intended to provide help for people with similar difficulties, and to see if there are better solutions. I'm not sure which FTP client you use,

Re: [R-SIG-Mac] R.app source repository?

2006-07-07 Thread Simon Urbanek
On Jul 7, 2006, at 11:10 PM, Vincent Vu wrote: I've searched the FAQ and Simon Urbanek's pages and can't seem to find information on the development of R.app. I've found nightly builds, but I can't seem to find the source code. Is there a repository where it is being kept? There

Re: [R-SIG-Mac] Start R with --save?

2006-07-13 Thread Simon Urbanek
On Jul 13, 2006, at 7:10 PM, Duncan Murdoch wrote: I am not sure if the command line arg --save is supposed to be supported by R.app, No, it's not supposed to be supported. R.app ignores all command line arguments, because it assumes that it was started using LS (which supply their own

Re: [R-SIG-Mac] Start R with --save?

2006-07-13 Thread Simon Urbanek
On Jul 14, 2006, at 1:19 AM, Byron Ellis wrote: I would vote for a preference option, because I actually like the opposite behavior (--no-save) by default :-) Ok, now implemented in 3317. For now there is no UI for it, so you can set it only from the shell, e.g.: defaults write

Re: [R-SIG-Mac] RMySQL won't install

2006-07-31 Thread Simon Urbanek
On Jul 31, 2006, at 2:26 PM, Chris Bunch wrote: I am having problems installing the RMySQL binary package [Mac OS X 10.4.7; R 2.3.1; R-GUI 1.16 (3198); mysql-max-5.0.22-osx10.4-powerpc-64bit (binary)] ^^^ --- this is not a good idea - it won't work, because the 64-bit MySQL package

Re: [R-SIG-Mac] Compiling ROracle on OSX 10.4.7/R 2.3.1

2006-07-31 Thread Simon Urbanek
Alexander, On Jul 31, 2006, at 1:14 PM, Alexander Ploner wrote: I have one or several problems with compiling ROracle under OS X 10.4.7 (ppc) and R 2.3.1, using the Oracle client v. 10g: 1) The default build process produces an empty dll: When running R CMD INSTALL, for some reason gcc

Re: [R-SIG-Mac] Need indexing program for OS-X.4.7

2006-07-31 Thread Simon Urbanek
Dwight, can you enlighten us, please, what has your question to do with R? I wouldn't recommend the use of R for indexing documents, although it could be done ;). Cheers, Simon On Jul 27, 2006, at 6:27 PM, Dwight Hines wrote: I'm finishing up a long manuscript and I need a good free or

Re: [R-SIG-Mac] Compiling ROracle on OSX 10.4.7/R 2.3.1

2006-08-01 Thread Simon Urbanek
Thanks, Alexander. This seems to be a combination of a bug in R and a bug in ROracle: On Aug 1, 2006, at 8:50 AM, Alexander Ploner wrote: R_ARCH=/ppc R CMD INSTALL --library=~/Library/R/library/ ROracle_0.5-7.tar.gz I get the following: * Installing *source* package 'ROracle' ...

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