Before anything else, what does:
> library("affxparser");
> sessionInfo();
report?
/Henrik
PS. This is really a question for the Bioconductor list, because it is
an 'affxparser' question and independent of the aroma framework, but
let's deal with it here this time.
On Wed, Jul 13, 2011 at 11:59 AM, sean nj <njs...@gmail.com> wrote:
> Hi guys,
>
> I was trying to convert BrainArray custom CDF for Affy HT_HG-
> U133_Plus_PM chip into binary CDF using convertCdf(). But every time I
> tried, I got the same error message:
>
> R for Windows GUI front-end:
>
> R for Windows GUI front-end has encountered a problem and needs to
> close.
>
> Error Signature:
>
> AppName: rgui.exe
> AppVer: 2.130.55427.0
> ModName: affxparser.dll
> ModVer: 0.0.0.0
> OffSet: 0005207a
>
> In the R GUI window:
>
>> library(affxparser)
>> convertCdf("HTHGU133PlusPM_Hs_ENTREZG.cdf",
>> "HTHGU133PlusPM_Hs_ENTREZG,Binary.cdf",
> + version = 4,force = TRUE,verbose=TRUE)
> Reading CDF header...
> Reading CDF header...done
> Reading CDF QC units...
>
>
> It hangs like that forever and nothing happens.
>
> I got this eror only when I tried to convert BrainArray's custom CDF
> for Affy HT_HG-U133_Plus_PM chip. I tried ENTREZG and REFSEQ versions
> of the custom CDF and got the same error message. I had no problem
> when converting the custom CDF for HG-U133_Plus_2 chip.
>
> Since R hangs every time the error message pops up, I could not
> provide any sessionInfo() info. My computer runs windows XP 32 bit
> with the latest R.
>
> Any suggestion?
>
> Thanks a lot for the help!
>
> Ying
>
> --
> When reporting problems on aroma.affymetrix, make sure 1) to run the latest
> version of the package, 2) to report the output of sessionInfo() and
> traceback(), and 3) to post a complete code example.
>
>
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>
--
When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report the output of sessionInfo() and
traceback(), and 3) to post a complete code example.
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