Hi Henrik, Thanks a lot for the help!
What confused me is that I have no problem converting custom CDFs for HG-U133_Plus_2 chip. Below is the sessionInfo. Ying > library(affxparser) > sessionInfo() R version 2.13.0 (2011-04-13) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] affxparser_1.24.0 On Jul 13, 3:03 pm, Henrik Bengtsson <henrik.bengts...@aroma- project.org> wrote: > Before anything else, what does: > > > library("affxparser"); > > sessionInfo(); > > report? > > /Henrik > > PS. This is really a question for the Bioconductor list, because it is > an 'affxparser' question and independent of the aroma framework, but > let's deal with it here this time. > > > > On Wed, Jul 13, 2011 at 11:59 AM, sean nj <njs...@gmail.com> wrote: > > Hi guys, > > > I was trying to convert BrainArray custom CDF for Affy HT_HG- > > U133_Plus_PM chip into binary CDF using convertCdf(). But every time I > > tried, I got the same error message: > > > R for Windows GUI front-end: > > > R for Windows GUI front-end has encountered a problem and needs to > > close. > > > Error Signature: > > > AppName: rgui.exe > > AppVer: 2.130.55427.0 > > ModName: affxparser.dll > > ModVer: 0.0.0.0 > > OffSet: 0005207a > > > In the R GUI window: > > >> library(affxparser) > >> convertCdf("HTHGU133PlusPM_Hs_ENTREZG.cdf", > >> "HTHGU133PlusPM_Hs_ENTREZG,Binary.cdf", > > + version = 4,force = TRUE,verbose=TRUE) > > Reading CDF header... > > Reading CDF header...done > > Reading CDF QC units... > > > It hangs like that forever and nothing happens. > > > I got this eror only when I tried to convert BrainArray's custom CDF > > for Affy HT_HG-U133_Plus_PM chip. I tried ENTREZG and REFSEQ versions > > of the custom CDF and got the same error message. I had no problem > > when converting the custom CDF for HG-U133_Plus_2 chip. > > > Since R hangs every time the error message pops up, I could not > > provide any sessionInfo() info. My computer runs windows XP 32 bit > > with the latest R. > > > Any suggestion? > > > Thanks a lot for the help! > > > Ying > > > -- > > When reporting problems on aroma.affymetrix, make sure 1) to run the latest > > version of the package, 2) to report the output of sessionInfo() and > > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > > "aroma.affymetrix" group with websitehttp://www.aroma-project.org/. > > To post to this group, send email to aroma-affymetrix@googlegroups.com > > To unsubscribe and other options, go tohttp://www.aroma-project.org/forum/- > > Hide quoted text - > > - Show quoted text - -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/